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Job:
Openings for Doctoral Researchers at the University of Helsinki
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3 months ago
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How to convert large gene counts data into matrix?
R
Bioconductor
singlecell
bioinformatics
seurat
updated 9 weeks ago by
Gordon Smyth
50k • written 4.7 years ago by
sambunga094
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Answer: Different number of exons in reference genome affects DEXSeq analysis
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Alejandro Reyes
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Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…
Answer: Adding columns to DEXSeqResults object
by
Alejandro Reyes
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I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…
Answer: rlog transformation
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Michael Love
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It is dependent on the other samples in the dataset.
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*"This worked really well for brain but has not work as well for lung as I get #N/A for many padj"* See the vignette for the cause of th…
Answer: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
Michael Love
41k
Starting from the very top, do you understand the error? You need to provide sample info that matches 1-to-1 the columns of the counts matr…
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Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
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