Showing : bioinformatics • reset
3
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8
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1.7k
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Problem with readFast5Summary in IONiseR related to HDF5
ioniser bioinformatics minion
updated 6.6 years ago by ▴ 380 • written 7.1 years ago by • 0
1
vote
3
replies
2.1k
views
Gene Ontology and Gene Set Enrichment
rna-seq bioinformatics gene ontology gene set enrichment go
updated 7.5 years ago by ★ 1.2k • written 7.6 years ago by ▴ 10
2
votes
5
replies
1.5k
views
Differential Gene Expression
deseq2 bioinformatics rna-seq Tutorial
updated 7.5 years ago by 41k • written 7.6 years ago by ▴ 10
3
votes
6
replies
1.9k
views
Analyzing Open source PPI databases
ppi bioinformatics
updated 8.7 years ago by 25k • written 8.7 years ago by ▴ 10
0
votes
2
replies
3.1k
views
AffyMetrix CEL file; data is already transformed too log2
affy microarray bioinformatics
9.2 years ago kanacska ▴ 10
0
votes
2
replies
2.4k
views
Job: Bioinformatics Research Associate, University of Adelaide
job Job australia bioinformatician job bioinformatics
written 8.8 years ago by ▴ 170
3
votes
7
replies
2.5k
views
How to convert bia file to tsv file
samtools bioinformatics
8.9 years ago engr.yahya602 • 0
3
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6
replies
1.9k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 7.0 years ago by 65k • written 7.0 years ago by ▴ 20
0
votes
1
reply
1.6k
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In DESeq2, why LRT result's LFC doesn't match with any of Wald test result's LFC?
deseq2 bioinformatics
updated 7.5 years ago by 41k • written 7.5 years ago by • 0
1
vote
2
replies
2.2k
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Job: Postdoctoral Research Fellow in Bioinformatics – Systems Biology of Childhood Cancer
bioinformatics systemsbiology cancer job austria Job
8.8 years ago • updated 8.7 years ago heinrich.kovar ▴ 10
1
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2
replies
2.5k
views
topGO for Gene Ontology and Gene Set enrichment
topgo gene ontology gene set enrichment rna-seq bioinformatics
updated 7.3 years ago by ▴ 730 • written 7.5 years ago by ▴ 10
4
votes
2
replies
1.2k
views
seeking a paper or journal review about repeated multiple testing for Biological ChIP-seq replicates?
bioinformatics paper multiple treatments biologicalreplicates
updated 7.8 years ago by 50k • written 7.8 years ago by ▴ 80
1
vote
1
reply
5.5k
views
Mfuzz: fill.NA - Warning messages: argument is not numeric or logical: returning NA
mfuzz clustering bioinformatics proteomics timecourse
updated 8.2 years ago by 1.6k • written 8.2 years ago by • 0
1
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1
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1.7k
views
News: New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
computational biology bioinformatics teaching master News
updated 7.8 years ago by • 0 • written 7.8 years ago by ▴ 10
1
vote
2
replies
1.3k
views
How do i perform chi square test in r?
microarray chisquare bioconductor bioinformatics
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 10
0
votes
2
replies
719
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 16 months ago by • 0
1
vote
2
replies
941
views
Results Goana after edgeR pipeline
EdgeR Bioinformatics Goana
2.7 years ago • updated 2.6 years ago Barista • 0
1
vote
5
replies
3.2k
views
How to convert a bam file into tsv file format?
bioinformatics
updated 8.6 years ago by 50k • written 8.6 years ago by • 0
1
vote
2
replies
1.3k
views
Not many DE genes using glmTreat
EdgeR Bioinformatics Transcriptomics Quantseq
2.7 years ago Barista • 0
2
votes
2
replies
1.1k
views
How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
2.2 years ago Hasan Alanya • 0
2
votes
2
replies
960
views
Help for Research Proposal
drug development pathways bioinformatics
updated 5.4 years ago by ★ 13k • written 5.4 years ago by • 0
0
votes
1
reply
1.2k
views
News: Exploiting computational immunology to understand the immune system| Symposium
computational biology immunology bioinformatics symposium RIMLS News
updated 7.3 years ago by • 0 • written 7.3 years ago by • 0
1
vote
6
replies
2.7k
views
DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 13 months ago by 41k • written 5.3 years ago by • 0
0
votes
1
reply
1.6k
views
Get Gene IDs for a list of Gene Names in R
r bioinformatics org.Hs.eg.db genetics
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
votes
2
replies
2.4k
views
Error in CummeRbund installation
cummerbund rnaseq bioinformatics bioconductor R
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
0
votes
1
reply
1.2k
views
surrogate variable analysis using R package "sva"
sva r bioinformatics
updated 7.5 years ago by ▴ 760 • written 7.5 years ago by ▴ 10
3
votes
4
replies
970
views
edgeR analysis of cells treated with either drug1, drug2, or a time matched control at two different time points, did I set this up correctly?
edger rnaseq gene expression bioinformatics
updated 5.6 years ago by 50k • written 5.6 years ago by • 0
0
votes
2
replies
5.0k
views
Converting Fastq to Fasta in R
R Bioinformatics Fastq Fasta
updated 5.2 years ago by 65k • written 5.2 years ago by • 0
1
vote
1
reply
1.2k
views
FPKM normalization questions!
r fpkm bioinformatics
updated 7.5 years ago by ★ 28k • written 7.5 years ago by ▴ 10
0
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0
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1.4k
views
Job: Senior Postdoctoral Fellow in Computational Biology/Bioinformatics : Adelaide, Australia
postdoc bioinformatics network analysis australia systemsbiology Job
8.0 years ago david.lynn • 0
0
votes
0
replies
1.6k
views
Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job bioinformatics ngs genomics statistics Job
8.1 years ago Hui Sun Leong ▴ 10
0
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0
replies
2.1k
views
Job: PhD Positions in Helsinki
bioinformatics job Helsinki Finland Job
8.2 years ago Simon Anders ★ 3.7k
0
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0
replies
2.4k
views
Job: Full position as Bioinformatician at ETH Zurich in Personalized Medicine Data Fusion and Method Implementation
bioinformatics personalized medicine genomics Job
9.5 years ago Daniel Stekhoven ▴ 10
0
votes
3
replies
1.5k
views
How to extract / pull out each row(a.k.a, single genome interval ) from given bed files by row by row for meta analysis?
r bioinformatics peakset
updated 12 months ago by • 0 • written 8.3 years ago by ▴ 80
0
votes
0
replies
2.0k
views
Job: Postdocs and PhD students in the areas of Bioinformatics, Biostatistics or Medical Informatics
jobs job bioinformatics R Job
8.4 years ago Frank Kramer ▴ 60
1
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0
replies
1.7k
views
Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
8.4 years ago Yassen Assenov ▴ 10
0
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0
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1.4k
views
Job: Data Scientist, Mount Sinai School of Medicine, New York, NY USA
job postdoctoral fellow computational biology bioinformatics new york Job
7.4 years ago supindab ▴ 10
0
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1
reply
1.6k
views
Job: Bioinformatics Post-Doc Positions
cancer BIOINFORMATICS genomics RNAseq miRseq Job
9.1 years ago aaron • 0
0
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0
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1.5k
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Job: Faculty Position in Computational Systems Biology at UC Riverside
systemsbiology bioinformatics position Job
9.5 years ago Thomas Girke ★ 1.7k
0
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0
replies
2.1k
views
Job: Bioinformatician - The Ragon Institute of MGH, MIT and Harvard
bioinformatician job bioinformatics immunology HIV Job
7.3 years ago • updated 7.1 years ago Ragon Institute of MGH, MIT and Harvard • 0
1
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0
replies
1.6k
views
Job: Job Opening: Computational Biologists in Cambridge, MA and NYC
ngs computational biology R genomics bioinformatics Job
8.5 years ago mmartin ▴ 20
1
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0
replies
1.2k
views
Job: Bioinformatician/Bioinformatics position, IMB Mainz, Germany
bioinformatics germany job Job
7.5 years ago sergisayolspuig ▴ 80
0
votes
0
replies
1000
views
Job: Job: Senior Scientist, Oncology Translational Research Johnson and Johnson
cancer jobs computational biology bioinformatics Job
5.9 years ago Michael Gormley ▴ 60
0
votes
0
replies
1.7k
views
Job: PhD Studentship: Genome-scale analysis of host-pathogen interactions
rnaseq single cell bioinformatics R epigenomics Job
8.5 years ago Garry Myers • 0
1
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0
replies
1.0k
views
Job: Chief Data Scientist
bioinformatics Job
7.4 years ago kaufmanm ▴ 10
0
votes
0
replies
1.2k
views
Job: PhD Position in Bioinformatics
bioinformatics protein variantannotation data integration Job
7.4 years ago stephan.pabinger • 0
0
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0
replies
1.4k
views
Job: Postdoc Positions in Computational Biology, Helmholtz Centre for Infection Research, Braunschweig, Germany
job bioinformatics computational biology post-doc postdoc Job
7.5 years ago cristina della beffa ▴ 30
0
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0
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1.6k
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Job: Multiple postdoctoral fellowships are available immediately in the Gehlenborg Lab in the Department of Biomedical Informatics at Harvard Medical Scho…
bioinformatics bioinformatician job data visualization Job
8.5 years ago Doe, Aimee ▴ 40
1
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0
replies
1.3k
views
Job: FIMM-EMBL International PhD program now accepting applications
bioinformatics molecular medicine PhD Job
7.3 years ago gretchen.repasky ▴ 20
0
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0
replies
1.8k
views
Job: Harvard Medical School - Research Fellow Position at the Department of Biomedical Informatics
bioinformatician job bioinformatics bioinformatics scientist bioinformatician postdoc Job
8.5 years ago Doe, Aimee ▴ 40
50 results • Page 1 of 1
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Comment: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia) by christianhilton64 • 0
I'm less familiar with the specifics of GSVA, but I'm curious about the overall goal of this analysis. Could you provide a high-level summa…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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