Bioconductor BiomaRT

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clusterProfiler OrgDb biomaRt Zea_mays

updated 4 hours ago by Guido Hooiveld ★ 3.9k • written 4 hours ago by sansan • 0

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109

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biomaRt

updated 16 days ago by James W. MacDonald 65k • written 16 days ago by Reeya • 0

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6.4k

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error lazy R biomaRt table

updated 28 days ago by juo5 • 0 • written 5 months ago by Abhishek ▴ 10

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1.1k

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biomaRT

updated 28 days ago by James W. MacDonald 65k • written 4.0 years ago by RJW63 • 0

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687

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biomart rnaseq

written 5.2 years ago by jarod_v6@libero.it ▴ 40

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

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Scholar to Peter Hickey ▴ 740