Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
biomaRT
•
reset
22
votes
15
replies
7.2k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt
RNASeqData
R
updated 4 months ago by
Marie
▴ 10 • written 23 months ago by
Dina
▴ 50
10
votes
10
replies
5.6k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 7 days ago by
juo5
• 0 • written 5 months ago by
Abhishek
▴ 10
7
votes
5
replies
6.6k
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
updated 5 months ago by
Ke
• 0 • written 23 months ago by
kieran.short
▴ 40
7
votes
6
replies
3.8k
views
Conversion of UniProt to Ensembl
biomaRt
ensembldb
UniProt.ws
updated 5 months ago by
Marcel Ramos
690 • written 19 months ago by
Recep
▴ 20
6
votes
9
replies
537
views
biomaRt has encountered an unknown server error.
biomaRt
host
useEnsembl
updated 8 weeks ago by
alexander3
• 0 • written 8 weeks ago by
Amparo
• 0
5
votes
4
replies
9.5k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 8 months ago by
James W. MacDonald
65k • written 3.6 years ago by
Mahan
• 0
4
votes
12
replies
810
views
Ensembl down???
biomaRt
4 months ago • updated 3 months ago
bas_work
▴ 30
4
votes
2
replies
284
views
Enrichement with clusterProfiler and biomart
biomaRt
clusterProfiler
Zea_mays
updated 10 weeks ago by
Guido Hooiveld
★ 3.9k • written 10 weeks ago by
sanchezsanchez
• 0
3
votes
2
replies
947
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG
DESeq2
biomaRt
clusterProfiler
org.Mm.eg.db
updated 7 months ago by
Guido Hooiveld
★ 3.9k • written 7 months ago by
Milan
▴ 10
3
votes
3
replies
8.9k
views
How to find rsID with biomaRt in R
biomaRt
updated 6 weeks ago by
James W. MacDonald
65k • written 3.1 years ago by
Federica
▴ 10
3
votes
4
replies
1.6k
views
biomaRt error: database disk image is malformed
biomaRt
updated 10 months ago by
Emile
• 0 • written 2.5 years ago by
victorcampos1995
• 0
3
votes
2
replies
366
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
4 months ago
henrydionne
▴ 10
2
votes
4
replies
851
views
Use with_go along with other filters in getBM function
Annotation
biomaRt
10 months ago • updated 9 months ago
RuBBiT0
▴ 10
2
votes
2
replies
541
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
10 weeks ago
bd2000
▴ 30
1
vote
4
replies
993
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 7 days ago by
James W. MacDonald
65k • written 3.9 years ago by
RJW63
• 0
1
vote
1
reply
278
views
Error with biomaRt
biomaRt
updated 10 weeks ago by
Mike Smith
★ 6.5k • written 10 weeks ago by
goldenboy
• 0
1
vote
5
replies
552
views
Errors with makeTxDbFromBiomart
biomaRt
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Jerina
▴ 10
1
vote
2
replies
550
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
8 months ago
Miguel
• 0
1
vote
5
replies
315
views
BiomaRt download data error
biomaRt
updated 7 weeks ago by
Mike Smith
★ 6.5k • written 7 weeks ago by
Max Bone
• 0
1
vote
2
replies
530
views
How to find stop codons for a list of genes
stopcodon
biomaRt
4 months ago
Marek Gierlinski
▴ 30
1
vote
7
replies
4.2k
views
Problems Installing biomaRt
biomaRt
updated 4 months ago by
James W. MacDonald
65k • written 24 months ago by
ksci
▴ 20
1
vote
0
replies
140
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
11 weeks ago
Benjamin
▴ 30
1
vote
1
reply
178
views
502 error biomaRt getLDS()
ensembldb
biomaRt
updated 6 weeks ago by
Robin
• 0 • written 7 weeks ago by
Pez
▴ 10
1
vote
2
replies
730
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 10 months ago by
Mike Smith
★ 6.5k • written 10 months ago by
Yijing
• 0
1
vote
4
replies
601
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
6 months ago
andrew.b.kleist
▴ 10
0
votes
3
replies
943
views
Problem installing biomaRt on mac
biomaRt
mac
updated 7 months ago by
15753563659
▴ 50 • written 16 months ago by
alfonsosaera
• 0
0
votes
2
replies
405
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
6 weeks ago
eefernan5
• 0
0
votes
3
replies
502
views
BioMart Error message when pulling sequences
biomaRt
bioma
updated 11 months ago by
Mike Smith
★ 6.5k • written 11 months ago by
Luca
• 0
0
votes
3
replies
1.2k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 11 months ago by
nhaus
▴ 10
0
votes
1
reply
1.2k
views
biomaRt - NameSpace loading failed
biomaRt
bioma
updated 11 months ago by
Mike Smith
★ 6.5k • written 11 months ago by
Alessia
• 0
0
votes
2
replies
966
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt
ensembldb
RNA
ensembl
updated 11 months ago by
Johannes Rainer
★ 2.0k • written 11 months ago by
Christopher
• 0
0
votes
1
reply
178
views
biomaRt issue
biomaRt
updated 7 weeks ago by
Mike Smith
★ 6.5k • written 7 weeks ago by
Fariz
• 0
0
votes
1
reply
202
views
error in mapIds function
mapIds
biomaRt
updated 4 weeks ago by
Marcel Ramos
690 • written 4 weeks ago by
Regina
• 0
0
votes
1
reply
1.3k
views
News:
News:Ensembl 110 has been released
ensembldb
biomaRt
updated 8 months ago by
Michael Love
41k • written 8 months ago by
Benjamin
▴ 30
0
votes
2
replies
329
views
Biomart - upstream region of 'coding'
biomaRt
updated 6 months ago by
Mike Smith
★ 6.5k • written 6 months ago by
andrebolerbarros
▴ 20
0
votes
3
replies
617
views
BiomaRt: problems annotating a list of DEGs from DESeq2
biomaRt
updated 11 months ago by
Michael Love
41k • written 11 months ago by
alan.g.hudson
• 0
0
votes
1
reply
749
views
multiple filters in biomaRt
biomaRt
updated 9 months ago by
RuBBiT0
▴ 10 • written 10 months ago by
Yijing
• 0
0
votes
1
reply
559
views
biomaRt_getBM_Failed to collect lazy table
getBM
biomaRt
updated 3 months ago by
James W. MacDonald
65k • written 3 months ago by
ai.yaku
• 0
0
votes
0
replies
326
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
7 months ago
ali.oghabian
• 0
0
votes
1
reply
572
views
Trouble using biomaRt to pull pathway genes from GO
GO
biomaRt
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
cstorer
• 0
0
votes
3
replies
686
views
Error with makeTxDbFromBiomart
DEXSeq
biomaRt
updated 7 months ago by
Hervé Pagès
16k • written 8 months ago by
anavmar1
• 0
0
votes
10
replies
729
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R
BioMart
biomaRt
4 months ago • updated 26 days ago
ScafioRuo
• 0
0
votes
3
replies
420
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 5 months ago by
Gordon Smyth
50k • written 5 months ago by
Marilyn
• 0
0
votes
3
replies
295
views
Obtaining rsIDs with ENSG and variant ID information
rsid
biomaRt
updated 3 months ago by
Robert Castelo
★ 3.1k • written 3 months ago by
bd2000
▴ 30
0
votes
2
replies
314
views
Problem with loading ensembl version 105.
biomaRt
3 months ago
RC
• 0
0
votes
3
replies
661
views
How to getting synonymous SNPs from BiomaRt before timing out?
biomaRt
SNP
updated 12 months ago by
James W. MacDonald
65k • written 12 months ago by
Damien
• 0
0
votes
1
reply
912
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
written 2.4 years ago by
Lillian
• 0
47 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Awards
• All
Popular Question
to
Pierre Lindenbaum
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Jenny Drnevich
★ 2.0k
Popular Question
to
Robert Castelo
★ 3.1k
Teacher
to
Peter Langfelder
★ 2.9k
Locations
• All
EMBL Heidelberg,
just now
Finland,
1 minute ago
France,
1 minute ago
France,
12 minutes ago
United States,
16 minutes ago
Traffic: 807 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6