21 days ago • updated 13 days ago
kieran.short
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18 days ago
floriandeckert
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updated 4 weeks ago by
Curiousity
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dr
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ksci
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ATpoint
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7 months ago
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Biomart's getBM returns no genes for an existing GO-term in grch38, and less then expected in grch37
updated 9 months ago by
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written 9 months ago by
A
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JINYI
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updated 11 months ago by
Mike Smith
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written 15 months ago by
Zen
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12 months ago
mchakiachvili
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12
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1.1k
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updated 12 months ago by
Mike Smith
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written 5.4 years ago by
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15 months ago • updated 12 months ago
mchakiachvili
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updated 13 months ago by
Kevin Blighe
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written 13 months ago by
Makoto
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updated 13 months ago by
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written 19 months ago by
lirongrossmann
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Recent ...
Replies
Comment: ashr vs apeglm for interaction data
by
Ali Barry
▴
30
Thanks, I'll trying playing a bit there. I have done some minor filtering already (requiring at least 5 counts in 10% of my samples, across…
Comment: ashr vs apeglm for interaction data
by
Michael Love
37k
I see why apeglm is conservative— the dispersion is very high within group.
An idea would be to use ashr but do some additional filtering …
Comment: How to figure out the FC value from Limma
by
ATpoint
★
1.2k
That’s an Excel problem, not a GEO/R problem or related to limma and Bioconductor.
Comment: ashr vs apeglm for interaction data
by
Ali Barry
▴
30
Hi Michael,
Plots attached. Many of the large fold changes with `ashr` are driven by one sample per group, but a few are maybe a bit more …
Comment: regression analysis for epic array methylation data using limma
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nabiyogesh
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Thanks!
I have tried this; I am not sure after that how to find logeGFR associated probe? and also, how to filter significant probe?
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