Showing : biomaRT • reset
13
votes
8
replies
13k
views
how to use biomaRt with ensembl build 37
biomaRt ensembl GRCh37
updated 7.6 years ago by ▴ 790 • written 7.6 years ago by ▴ 90
2
votes
4
replies
11k
views
biomartRt: convert mouse gene symbol return multiple human gene symbol
biomart gene symbol
updated 6.9 years ago by ▴ 760 • written 7.0 years ago by ▴ 20
21
votes
24
replies
10k
views
Problem with biomart's listMarts function
biomart bug
updated 6.1 years ago by ▴ 470 • written 6.6 years ago by ★ 1.9k
2
votes
3
replies
8.9k
views
BiomaRt: protein coding transcript identification
ensembl protein coding biomart
updated 7.6 years ago by ▴ 790 • written 7.6 years ago by ▴ 120
0
votes
2
replies
8.8k
views
biomaRt proxy issues
biomaRt biomaRt
updated 7.9 years ago by ▴ 30 • written 7.9 years ago by ▴ 610
5
votes
2
replies
8.6k
views
Probe to gene id conversion
annotate biomart probe to gene id
updated 7.6 years ago by 60k • written 7.6 years ago by ▴ 20
0
votes
3
replies
7.8k
views
[biomaRt] Finding Orthologs genes between Human and Mouse - problem with getBM to retrieve some attributes
biomaRt biomaRt
updated 9.0 years ago by ▴ 540 • written 9.0 years ago by ▴ 20
1
vote
6
replies
6.8k
views
Getting HGNC gene names from Ensembl transcript IDs (e.g., ENST0000...)
rnaseq r biomart
updated 6.5 years ago by ★ 1.9k • written 6.5 years ago by ▴ 40
4
votes
8
replies
6.7k
views
Ensembl site unresponsive
ensembl biomart
updated 13 months ago by • 0 • written 19 months ago by ▴ 40
2
votes
4
replies
6.5k
views
converting ensembl transcript ID to ensemble gene: problem & missing values
biomart error ensembldb
4.3 years ago • updated 4.2 years ago Yuqia • 0
6
votes
5
replies
6.4k
views
biomaRt: error using useDataset or useMart
software error biomart usemart usedataset
updated 4.5 years ago by ★ 5.6k • written 4.5 years ago by ▴ 40
5
votes
19
replies
5.9k
views
biomaRt SNP (rs ID) -to-HGNC symbol mapping question
biomart
7.6 years ago k.askland ▴ 20
2
votes
3
replies
5.8k
views
BiomaRt::getBM Error in UseMethod(filter_)
biomaRt
18 months ago suyang • 0
0
votes
2
replies
5.8k
views
Error in UseMethod("filter_") : no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tbl_dbi', 'tbl_sql', …
ErrorinUseMethod("filter_") biomaRt
updated 17 months ago by • 0 • written 18 months ago by • 0
0
votes
1
reply
5.5k
views
Unable to use biomaRt because Rcurl doesn't pick up my proxy server address
biomaRt biomaRt
updated 15.9 years ago by ▴ 110 • written 15.9 years ago by ★ 3.4k
7
votes
2
replies
5.1k
views
getBM error: The query to the BioMart webservice returned an invalid result
biomart
updated 4.3 years ago by ★ 5.6k • written 4.3 years ago by ▴ 30
21
votes
34
replies
5.0k
views
Biomart error when updating to R 4.0.2
Biomart
updated 19 months ago by ★ 5.6k • written 19 months ago by ▴ 40
1
vote
2
replies
5.0k
views
change the biomaRt host
biomaRt
updated 6.5 years ago by ▴ 140 • written 6.5 years ago by ▴ 80
0
votes
2
replies
5.0k
views
biomaRt proxy issues
biomaRt charm biomaRt charm
updated 13.3 years ago by ▴ 600 • written 13.3 years ago by ▴ 60
9
votes
5
replies
4.8k
views
Error: This function only works when used with the ensembl BioMart.
biomart error
6.5 years ago anchel.gonzalez • 0
19
votes
4
replies
4.7k
views
biomaRt no longer works with proxy after upgrade
biomart proxy rcurl
updated 6.6 years ago by ▴ 140 • written 6.6 years ago by ▴ 610
6
votes
7
replies
4.4k
views
BiomaRt workaround when Biomart server closed
biomart
updated 6.5 years ago by • 0 • written 6.6 years ago by ▴ 30
2
votes
4
replies
4.4k
views
Something wrong with the BioMart server
bioMart
updated 3.0 years ago by ★ 5.6k • written 3.0 years ago by • 0
0
votes
1
reply
4.3k
views
using BioMart to query UniProt identifiers
GO biomaRt GO biomaRt
updated 11.1 years ago by ▴ 540 • written 11.2 years ago by ▴ 140
0
votes
2
replies
4.0k
views
problem with 'biomaRt' package installation: Error in loadNamespace(i, c(lib.loc, .libPaths()))
biomaRt biomaRt
updated 10.1 years ago by ★ 8.2k • written 10.1 years ago by ▴ 60
3
votes
5
replies
3.9k
views
getBM returns shorter vectors than values
annotate biomaRt oligo annotate biomaRt oligo
updated 8.7 years ago by ▴ 540 • written 8.7 years ago by ▴ 380
9
votes
4
replies
3.7k
views
How to access Emsembl plants with biomaRt
biomart
6.5 years ago naholi.alejandri ▴ 50
0
votes
4
replies
3.7k
views
biomaRt connection problems
biomaRt biomaRt
updated 11.9 years ago by 21k • written 11.9 years ago by ★ 3.4k
0
votes
2
replies
3.7k
views
How to go from affymetrix to Ensembl transcript IDs
hgu95av2 affy biomaRt hgu95av2 affy biomaRt
updated 13.1 years ago by 13k • written 13.1 years ago by ▴ 300
0
votes
2
replies
3.7k
views
biomaRt installation error ??
biomaRt biomaRt
updated 10.0 years ago by ▴ 280 • written 10.0 years ago by ▴ 440
6
votes
12
replies
3.6k
views
Error in getBM of biomaRt package
biomaRt getBM
updated 5.2 years ago by • 0 • written 5.3 years ago by ▴ 100
0
votes
1
reply
3.6k
views
how to map choromosome location to gene ID
biomaRt biomaRt
updated 11.0 years ago by ▴ 540 • written 11.0 years ago by ▴ 140
0
votes
2
replies
3.6k
views
biomaRt: SNP no access to grch37.ensembl.org
SNP biomart archive grch37
7.2 years ago mrprao • 0
2
votes
5
replies
3.4k
views
Error in getBM using biomaRt
biomaRt
updated 3.3 years ago by ★ 5.6k • written 3.3 years ago by ▴ 50
0
votes
7
replies
3.4k
views
Can't match on some, but not all, Illumina probe IDs using biomaRt
R biomart illumina human ht-12 v4
updated 6.5 years ago by ▴ 790 • written 6.5 years ago by • 0
0
votes
5
replies
3.3k
views
Ensembl biomaRt connection errors
software error biomart ensembl
updated 5.9 years ago by ▴ 70 • written 5.9 years ago by • 0
0
votes
5
replies
3.2k
views
BioMart connection problem
biomaRt biomaRt
11.5 years ago • updated 11.4 years ago Paul Leo ▴ 970
1
vote
2
replies
3.2k
views
biomaRt: getting start and end locations of gene on chromosome
GO biomaRt GO biomaRt
updated 12.9 years ago by 60k • written 12.9 years ago by ★ 1.1k
2
votes
11
replies
3.1k
views
biomaRT connexion problem make failed my unit tests
biomaRt Peer's Certificate Ensembl
updated 16 months ago by ★ 5.6k • written 20 months ago by • 0
2
votes
2
replies
3.1k
views
topGO gene names/ensembl IDs
topgo biomart deseq2 gene ontology
updated 5.0 years ago by ▴ 660 • written 5.1 years ago by ▴ 10
0
votes
3
replies
3.1k
views
biomart database version problem
Annotation biomaRt Annotation biomaRt
updated 9.8 years ago by ▴ 540 • written 9.8 years ago by ▴ 40
11
votes
5
replies
3.1k
views
Scan error using biomart with version option
biomart
updated 4.4 years ago by ★ 5.6k • written 4.4 years ago by ▴ 40
4
votes
7
replies
3.1k
views
convert featureCounts's gene ID to entrez gene id
biomart rsubread gencode
updated 3.6 years ago by 60k • written 3.6 years ago by ▴ 20
3
votes
10
replies
3.1k
views
Getting a list of all tRNA encoding genes for an organism?
trna ncrna genomicfeatures featuredb biomart
updated 7.1 years ago by 15k • written 7.2 years ago by ▴ 150
0
votes
3
replies
3.0k
views
Working with ensembl 73 & BSGenome
Annotation BSgenome TranscriptDb biomaRt BSgenome Annotation BSgenome TranscriptDb biomaRt
updated 8.6 years ago by 15k • written 8.6 years ago by ★ 12k
1
vote
8
replies
3.0k
views
BioMart: curl option when using getBM in loop
curl biomart getBM Tutorial
updated 2.2 years ago by 60k • written 2.2 years ago by ▴ 10
0
votes
4
replies
3.0k
views
RefSeq coordinates from biomaRt
biomaRt biomaRt
updated 8.5 years ago by 21k • written 8.5 years ago by ▴ 210
2
votes
2
replies
3.0k
views
BiomaRt Arabidopsis genome unavailable
biomart retrive sequence
6.5 years ago oberlins ▴ 10
0
votes
3
replies
2.9k
views
Unambiguously mapping of affy IDs to gene symbols using hgu133plus2.db
Annotation hgu133plus2 biomaRt Annotation hgu133plus2 biomaRt
updated 11.7 years ago by ★ 7.2k • written 11.7 years ago by ▴ 170
2
votes
2
replies
2.9k
views
biomaaRt error: Extra content at the end of the document
biomaRt biomaRt
updated 8.4 years ago by ▴ 540 • written 8.4 years ago by ▴ 240
50 results • Page 1 of 1
Recent ...
Replies
Comment: Italicise by Pau • 0
They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0
Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.
Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0
I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…
Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0
The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…
Comment: DESeq2 how to specify contrast to test difference of differences by Nicole • 0
Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…
Votes
Answer: DESeq2 how to specify contrast to test difference of differences
Comment: DESeq2 how to specify contrast to test difference of differences
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
Answer: biomaRt error unable to fix: need help troubleshooting
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
Awards • All
Scholar to Nicole • 0
Teacher to Michael Love 37k
Popular Question to svlachavas ▴ 780
Popular Question to Gordon Smyth 45k
Scholar to Rory Stark ★ 4.4k
Locations • All
WEHI, Melbourne, Australia, 21 minutes ago
The city by the bay, 1 hour ago
Zheng Zhou, 1 hour ago
San Diego, 1 hour ago
United States, 3 hours ago
Traffic: 133 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6