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Showing :
biomart
•
reset
22
votes
15
replies
7.2k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt
RNASeqData
R
updated 4 months ago by
Marie
▴ 10 • written 23 months ago by
Dina
▴ 50
4
votes
12
replies
817
views
Ensembl down???
biomaRt
4 months ago • updated 3 months ago
bas_work
▴ 30
0
votes
10
replies
733
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R
BioMart
biomaRt
4 months ago • updated 27 days ago
ScafioRuo
• 0
10
votes
10
replies
5.7k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 8 days ago by
juo5
• 0 • written 5 months ago by
Abhishek
▴ 10
6
votes
9
replies
545
views
biomaRt has encountered an unknown server error.
biomaRt
host
useEnsembl
updated 8 weeks ago by
alexander3
• 0 • written 8 weeks ago by
Amparo
• 0
1
vote
7
replies
4.2k
views
Problems Installing biomaRt
biomaRt
updated 4 months ago by
James W. MacDonald
65k • written 24 months ago by
ksci
▴ 20
7
votes
6
replies
3.8k
views
Conversion of UniProt to Ensembl
biomaRt
ensembldb
UniProt.ws
updated 5 months ago by
Marcel Ramos
690 • written 19 months ago by
Recep
▴ 20
1
vote
5
replies
553
views
Errors with makeTxDbFromBiomart
biomaRt
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Jerina
▴ 10
7
votes
5
replies
6.6k
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
updated 5 months ago by
Ke
• 0 • written 23 months ago by
kieran.short
▴ 40
1
vote
5
replies
317
views
BiomaRt download data error
biomaRt
updated 7 weeks ago by
Mike Smith
★ 6.5k • written 7 weeks ago by
Max Bone
• 0
1
vote
4
replies
996
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 8 days ago by
James W. MacDonald
65k • written 4.0 years ago by
RJW63
• 0
5
votes
4
replies
9.5k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 8 months ago by
James W. MacDonald
65k • written 3.6 years ago by
Mahan
• 0
3
votes
4
replies
1.6k
views
biomaRt error: database disk image is malformed
biomaRt
updated 10 months ago by
Emile
• 0 • written 2.5 years ago by
victorcampos1995
• 0
2
votes
4
replies
854
views
Use with_go along with other filters in getBM function
Annotation
biomaRt
10 months ago
RuBBiT0
▴ 10
1
vote
4
replies
602
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
6 months ago
andrew.b.kleist
▴ 10
0
votes
3
replies
505
views
BioMart Error message when pulling sequences
biomaRt
bioma
updated 11 months ago by
Mike Smith
★ 6.5k • written 11 months ago by
Luca
• 0
0
votes
3
replies
945
views
Problem installing biomaRt on mac
biomaRt
mac
updated 7 months ago by
15753563659
▴ 50 • written 16 months ago by
alfonsosaera
• 0
0
votes
3
replies
689
views
Error with makeTxDbFromBiomart
DEXSeq
biomaRt
updated 7 months ago by
Hervé Pagès
16k • written 8 months ago by
anavmar1
• 0
0
votes
3
replies
296
views
Obtaining rsIDs with ENSG and variant ID information
rsid
biomaRt
updated 3 months ago by
Robert Castelo
★ 3.1k • written 3 months ago by
bd2000
▴ 30
0
votes
3
replies
1.2k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 11 months ago by
nhaus
▴ 10
0
votes
3
replies
421
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 5 months ago by
Gordon Smyth
50k • written 5 months ago by
Marilyn
• 0
3
votes
3
replies
9.0k
views
How to find rsID with biomaRt in R
biomaRt
updated 7 weeks ago by
James W. MacDonald
65k • written 3.1 years ago by
Federica
▴ 10
0
votes
3
replies
620
views
BiomaRt: problems annotating a list of DEGs from DESeq2
biomaRt
updated 11 months ago by
Michael Love
41k • written 11 months ago by
alan.g.hudson
• 0
0
votes
2
replies
317
views
Problem with loading ensembl version 105.
biomaRt
3 months ago
RC
• 0
1
vote
2
replies
534
views
How to find stop codons for a list of genes
stopcodon
biomaRt
4 months ago
Marek Gierlinski
▴ 30
3
votes
2
replies
948
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG
DESeq2
biomaRt
clusterProfiler
org.Mm.eg.db
updated 7 months ago by
Guido Hooiveld
★ 3.9k • written 7 months ago by
Milan
▴ 10
3
votes
2
replies
369
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
4 months ago
henrydionne
▴ 10
0
votes
2
replies
970
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt
ensembldb
RNA
ensembl
updated 12 months ago by
Johannes Rainer
★ 2.0k • written 12 months ago by
Christopher
• 0
0
votes
2
replies
330
views
Biomart - upstream region of 'coding'
biomaRt
updated 6 months ago by
Mike Smith
★ 6.5k • written 6 months ago by
andrebolerbarros
▴ 20
1
vote
2
replies
732
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 10 months ago by
Mike Smith
★ 6.5k • written 10 months ago by
Yijing
• 0
2
votes
2
replies
545
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
10 weeks ago
bd2000
▴ 30
4
votes
2
replies
287
views
Enrichement with clusterProfiler and biomart
biomaRt
clusterProfiler
Zea_mays
updated 10 weeks ago by
Guido Hooiveld
★ 3.9k • written 10 weeks ago by
sanchezsanchez
• 0
1
vote
2
replies
554
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
8 months ago
Miguel
• 0
0
votes
2
replies
408
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
6 weeks ago
eefernan5
• 0
0
votes
1
reply
565
views
biomaRt_getBM_Failed to collect lazy table
getBM
biomaRt
updated 3 months ago by
James W. MacDonald
65k • written 3 months ago by
ai.yaku
• 0
0
votes
1
reply
1.3k
views
News:
News:Ensembl 110 has been released
ensembldb
biomaRt
updated 8 months ago by
Michael Love
41k • written 8 months ago by
Benjamin
▴ 30
0
votes
1
reply
915
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
written 2.4 years ago by
Lillian
• 0
0
votes
1
reply
751
views
multiple filters in biomaRt
biomaRt
updated 9 months ago by
RuBBiT0
▴ 10 • written 10 months ago by
Yijing
• 0
1
vote
1
reply
281
views
Error with biomaRt
biomaRt
updated 10 weeks ago by
Mike Smith
★ 6.5k • written 10 weeks ago by
goldenboy
• 0
0
votes
1
reply
1.3k
views
biomaRt - NameSpace loading failed
biomaRt
bioma
updated 11 months ago by
Mike Smith
★ 6.5k • written 11 months ago by
Alessia
• 0
0
votes
1
reply
208
views
error in mapIds function
mapIds
biomaRt
updated 4 weeks ago by
Marcel Ramos
690 • written 4 weeks ago by
Regina
• 0
1
vote
1
reply
180
views
502 error biomaRt getLDS()
ensembldb
biomaRt
updated 6 weeks ago by
Robin
• 0 • written 7 weeks ago by
Pez
▴ 10
0
votes
1
reply
574
views
Trouble using biomaRt to pull pathway genes from GO
GO
biomaRt
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
cstorer
• 0
0
votes
1
reply
179
views
biomaRt issue
biomaRt
updated 7 weeks ago by
Mike Smith
★ 6.5k • written 7 weeks ago by
Fariz
• 0
0
votes
0
replies
327
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
7 months ago
ali.oghabian
• 0
1
vote
0
replies
144
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
11 weeks ago
Benjamin
▴ 30
46 results • Page
1 of 1
Recent ...
Replies
Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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