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Showing :
biomart
•
reset
22
votes
15
replies
7.4k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt
RNASeqData
R
updated 5 months ago by
Marie
▴ 10 • written 2.0 years ago by
Dina
▴ 50
10
votes
10
replies
6.6k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 4 weeks ago by
juo5
• 0 • written 6 months ago by
Abhishek
▴ 10
7
votes
6
replies
4.0k
views
Conversion of UniProt to Ensembl
biomaRt
ensembldb
UniProt.ws
updated 6 months ago by
Marcel Ramos
690 • written 20 months ago by
Recep
▴ 20
7
votes
5
replies
6.8k
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
updated 6 months ago by
Ke
• 0 • written 24 months ago by
kieran.short
▴ 40
6
votes
9
replies
711
views
biomaRt has encountered an unknown server error.
biomaRt
host
useEnsembl
updated 12 weeks ago by
alexander3
• 0 • written 12 weeks ago by
Amparo
• 0
5
votes
4
replies
9.7k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 9 months ago by
James W. MacDonald
65k • written 3.7 years ago by
Mahan
• 0
4
votes
12
replies
927
views
Ensembl down???
biomaRt
4 months ago
bas_work
▴ 30
4
votes
2
replies
343
views
Enrichement with clusterProfiler and biomart
biomaRt
clusterProfiler
Zea_mays
updated 3 months ago by
Guido Hooiveld
★ 3.9k • written 3 months ago by
sansan
• 0
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG
DESeq2
biomaRt
clusterProfiler
org.Mm.eg.db
updated 8 months ago by
Guido Hooiveld
★ 3.9k • written 8 months ago by
Milan
▴ 10
3
votes
3
replies
9.3k
views
How to find rsID with biomaRt in R
biomaRt
updated 10 weeks ago by
James W. MacDonald
65k • written 3.1 years ago by
Federica
▴ 10
3
votes
2
replies
410
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
5 months ago • updated 4 months ago
henrydionne
▴ 10
3
votes
4
replies
1.7k
views
biomaRt error: database disk image is malformed
biomaRt
updated 10 months ago by
Emile
• 0 • written 2.5 years ago by
victorcampos1995
• 0
2
votes
2
replies
604
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
3 months ago
bd2000
▴ 30
2
votes
2
replies
137
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 5 days ago by
James W. MacDonald
65k • written 6 days ago by
sansan
• 0
2
votes
4
replies
912
views
Use with_go along with other filters in getBM function
Annotation
biomaRt
11 months ago • updated 10 months ago
RuBBiT0
▴ 10
1
vote
2
replies
612
views
How to find stop codons for a list of genes
stopcodon
biomaRt
5 months ago
Marek Gierlinski
▴ 30
1
vote
0
replies
183
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
3 months ago
Benjamin
▴ 30
1
vote
1
reply
354
views
Error with biomaRt
biomaRt
updated 3 months ago by
Mike Smith
★ 6.5k • written 3 months ago by
goldenboy
• 0
1
vote
4
replies
1.1k
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 4 weeks ago by
James W. MacDonald
65k • written 4.0 years ago by
RJW63
• 0
1
vote
1
reply
210
views
502 error biomaRt getLDS()
ensembldb
biomaRt
updated 10 weeks ago by
Robin
• 0 • written 10 weeks ago by
Pez
▴ 10
1
vote
2
replies
771
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 10 months ago by
Mike Smith
★ 6.5k • written 11 months ago by
Yijing
• 0
1
vote
5
replies
590
views
Errors with makeTxDbFromBiomart
biomaRt
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
Jerina
▴ 10
1
vote
4
replies
649
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
6 months ago
andrew.b.kleist
▴ 10
1
vote
2
replies
587
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
9 months ago
Miguel
• 0
1
vote
5
replies
386
views
BiomaRt download data error
biomaRt
updated 11 weeks ago by
Mike Smith
★ 6.5k • written 11 weeks ago by
Max Bone
• 0
1
vote
7
replies
4.4k
views
Problems Installing biomaRt
biomaRt
updated 5 months ago by
James W. MacDonald
65k • written 2.0 years ago by
ksci
▴ 20
0
votes
2
replies
440
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
10 weeks ago
eefernan5
• 0
0
votes
1
reply
1.5k
views
News:
News:Ensembl 110 has been released
ensembldb
biomaRt
updated 9 months ago by
Michael Love
41k • written 9 months ago by
Benjamin
▴ 30
0
votes
1
reply
667
views
biomaRt_getBM_Failed to collect lazy table
getBM
biomaRt
updated 4 months ago by
James W. MacDonald
65k • written 4 months ago by
ai.yaku
• 0
0
votes
3
replies
984
views
Problem installing biomaRt on mac
biomaRt
mac
updated 8 months ago by
15753563659
▴ 50 • written 17 months ago by
alfonsosaera
• 0
0
votes
0
replies
360
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
8 months ago
ali.oghabian
• 0
0
votes
1
reply
606
views
Trouble using biomaRt to pull pathway genes from GO
GO
biomaRt
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
cstorer
• 0
0
votes
3
replies
754
views
Error with makeTxDbFromBiomart
DEXSeq
biomaRt
updated 8 months ago by
Hervé Pagès
16k • written 9 months ago by
anavmar1
• 0
0
votes
3
replies
99
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 5 days ago by
James W. MacDonald
65k • written 5 days ago by
bas_work
▴ 30
0
votes
10
replies
792
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R
BioMart
biomaRt
5 months ago • updated 7 weeks ago
ScafioRuo
• 0
0
votes
3
replies
359
views
Obtaining rsIDs with ENSG and variant ID information
rsid
biomaRt
updated 4 months ago by
Robert Castelo
★ 3.3k • written 4 months ago by
bd2000
▴ 30
0
votes
2
replies
371
views
Problem with loading ensembl version 105.
biomaRt
4 months ago
RC
• 0
0
votes
1
reply
949
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
written 2.4 years ago by
Lillian
• 0
0
votes
3
replies
1.3k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 12 months ago by
nhaus
▴ 30
0
votes
1
reply
204
views
biomaRt issue
biomaRt
updated 11 weeks ago by
Mike Smith
★ 6.5k • written 11 weeks ago by
Fariz
• 0
0
votes
1
reply
262
views
error in mapIds function
mapIds
biomaRt
updated 8 weeks ago by
Marcel Ramos
690 • written 8 weeks ago by
Regina
• 0
0
votes
2
replies
354
views
Biomart - upstream region of 'coding'
biomaRt
updated 7 months ago by
Mike Smith
★ 6.5k • written 7 months ago by
andrebolerbarros
▴ 20
0
votes
1
reply
805
views
multiple filters in biomaRt
biomaRt
updated 10 months ago by
RuBBiT0
▴ 10 • written 11 months ago by
Yijing
• 0
0
votes
3
replies
459
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by
Gordon Smyth
50k • written 6 months ago by
Marilyn
• 0
0
votes
2
replies
690
views
biomart not ound some prevous release
biomart
rnaseq
written 5.2 years ago by
jarod_v6@libero.it
▴ 40
0
votes
1
reply
121
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 22 days ago by
James W. MacDonald
65k • written 22 days ago by
Reeya
• 0
46 results • Page
1 of 1
Recent ...
Replies
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
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