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biotype
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reset
1
vote
2
replies
1.8k
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DESEq2 Principal Component Analysis with different genes biotypes (protein coding, miRNAs, lncRNAs, etc)
DESeq2
PCA
rlog transformation
biotype
6.0 years ago
JoannaF
▴ 10
2
votes
1
reply
1.5k
views
Transcript biotypes for ncRNA in GRCh37 using biomaRt?
grch37
transcripts
biotype
biomaRt
ncrna
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
sergio.martinezcuesta
▴ 10
1
vote
3
replies
1.2k
views
biomaRT biotype TFs only
biomart
TF
biotype
ensembl
mus musculus
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
rbronste
▴ 60
1
vote
2
replies
871
views
Inserting "Biotype" into scater SCE objects
scater
sce
biotype
R
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
thebadpenny
• 0
1
vote
1
reply
577
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea
GSVA
biotype
proteincoding
msigdb
updated 4 months ago by
Robert Castelo
★ 3.3k • written 4 months ago by
snijesh
▴ 20
5 results • Page
1 of 1
Recent ...
Replies
Comment: Methylation Analysis experiment design using Limma
by
hortense96
• 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
Comment: Limma design with continuous and categorical covariates
by
hortense96
• 0
Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …
Answer: minfi::read.metharray.exp
by
Basti
▴ 770
Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…
Comment: DESeq2 - dispersion estimation when there is none
by
WardDeb
• 0
Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
Gayatri
• 0
Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …
Votes
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
Comment: Cannabis and KEGGgraph
Answer: Cannabis and KEGGgraph
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