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updated 29 days ago by James W. MacDonald 63k • written 29 days ago by bernatgel ▴ 150

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Comment: DESeq2, results(dds, name = <reference>) interpretation results by Rockbar • 0

Hello James, Thank you for answering > testing that the mean expression of the time 2, condition A samples is > different from zero I ha…

Comment: DeSeq2 design fails (full model matrix is less than full rank) by James W. MacDonald 63k

Both ATpoint and Basti have already told you that you cannot adjust for DMSO.

Answer: DESeq2, results(dds, name = <reference>) interpretation results by James W. MacDonald 63k

CondA is the mean expression for the time 2, condition A samples. If you do `results(dds, name = "CondA")`, you are testing that the mean e…

Comment: DeSeq2 design fails (full model matrix is less than full rank) by Theo • 0

Is there a way to test properly the differences in the 2 conditions (AA5-FHIN1) by subtracting the DMSO influence?

Answer: For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working by James W. MacDonald 63k

We do not support old versions of R/Bioconductor (and certainly not 3 year old versions!). Please upgrade to the current versions of both a…

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Answer: Deseq2, enrichGO and ensembl ID

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Scholar to James W. MacDonald 63k