Showing : biplot • reset
3
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1.1k
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How to ellipse a subset of data PCA biplot?
biplot PCA RNASeq PCAtools
updated 17 months ago by 3.5k • written 17 months ago by ▴ 10
0
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1
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509
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Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools biplot DESeq2 RNASeq PCA
updated 18 months ago by 3.5k • written 18 months ago by • 0
0
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3
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316
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Biplot environmental variables on top of PCA
deseq2 biplot plotpca
updated 2.3 years ago by 36k • written 2.3 years ago by • 0
2
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1
reply
1.5k
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biplot diagram of PCA analysis differs from plot of variables
r pca biplot
updated 6.9 years ago by 59k • written 6.9 years ago by • 0
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Comment: Quantile Normalization after rma or not? by Yang Shi • 0
Got that sir! Really thank you!
Answer: Is it necessary to standardize Combat in R? by James W. MacDonald 59k
If you already have normalized data, then there is no reason to do something else like centering or scaling the data.
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by James W. MacDonald 59k
There are some QC probes that you might use. ``` > library(pd.hg.u219) > library(DBI) > con <- db(pd.hg.u219) > dbListTables(con) […
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook by Bine ▴ 20
Thank you. The jpg it creates this way is empty. Remember I am doing it in R Notebook. But it did work with ggsave(). Many thanks
Comment: How to best visualize multi-level transcriptomics experiment data? by mohammedtoufiq91 ▴ 10
@aliibarry Sure, let me try `rowVars`.
Votes
Comment: Quantile Normalization after rma or not?
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: How to best visualize multi-level transcriptomics experiment data?
Answer: How to best visualize multi-level transcriptomics experiment data?
A: redundant probe sets in Affymetrix HG-U219
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