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biplot
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reset
3
votes
15
replies
1.1k
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How to ellipse a subset of data PCA biplot?
biplot
PCA
RNASeq
PCAtools
updated 17 months ago by
Kevin Blighe
3.5k • written 17 months ago by
mschmidt
▴ 10
0
votes
1
reply
509
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 18 months ago by
Kevin Blighe
3.5k • written 18 months ago by
ecg1g15
• 0
0
votes
3
replies
316
views
Biplot environmental variables on top of PCA
deseq2
biplot
plotpca
updated 2.3 years ago by
Michael Love
36k • written 2.3 years ago by
ecg1g15
• 0
2
votes
1
reply
1.5k
views
biplot diagram of PCA analysis differs from plot of variables
r
pca
biplot
updated 6.9 years ago by
James W. MacDonald
59k • written 6.9 years ago by
judit.sessler
• 0
4 results • Page
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Comment: Quantile Normalization after rma or not?
by
Yang Shi
• 0
Got that sir! Really thank you!
Answer: Is it necessary to standardize Combat in R?
by
James W. MacDonald
59k
If you already have normalized data, then there is no reason to do something else like centering or scaling the data.
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
James W. MacDonald
59k
There are some QC probes that you might use. ``` > library(pd.hg.u219) > library(DBI) > con <- db(pd.hg.u219) > dbListTables(con) […
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
by
Bine
▴ 20
Thank you. The jpg it creates this way is empty. Remember I am doing it in R Notebook. But it did work with ggsave(). Many thanks
Comment: How to best visualize multi-level transcriptomics experiment data?
by
mohammedtoufiq91
▴ 10
@aliibarry Sure, let me try `rowVars`.
Votes
Comment: Quantile Normalization after rma or not?
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: How to best visualize multi-level transcriptomics experiment data?
Answer: How to best visualize multi-level transcriptomics experiment data?
A: redundant probe sets in Affymetrix HG-U219
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