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blast
•
reset
0
votes
0
replies
329
views
Visualize blastx output in R
blast
13 months ago
kvigil
• 0
1
vote
2
replies
1.3k
views
blastn for selected database and/or organism
blast
blastsequences
updated 5.9 years ago by
James W. MacDonald
65k • written 5.9 years ago by
aush
▴ 40
0
votes
0
replies
905
views
batch blast matrix of protein sequences from R
R
blast
blastsequences
protein
6.2 years ago
andres.susrud
• 0
1
vote
2
replies
2.1k
views
blastSequences queries failing due to BLAST switch to https?
annotate
blastSequences
BLAST
https
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
ariel.hecht
• 0
3
votes
8
replies
8.2k
views
Which package to run blast
blast
updated 7.6 years ago by
Malcolm Cook
★ 1.6k • written 7.6 years ago by
biomiha
▴ 20
0
votes
0
replies
833
views
After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings
blast
variantannotation
7.6 years ago
li lilingdu
▴ 450
0
votes
1
reply
1.4k
views
Primer-blast with bioconductor packages
primer
blast
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
5
replies
5.4k
views
Blastp - through R
blast
R
8.1 years ago
maahpishanu
• 0
4
votes
13
replies
4.3k
views
How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation
blast
biostrings
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
Mathilde
• 0
2
votes
2
replies
1.8k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
9.4 years ago
b.stielow
• 0
4
votes
3
replies
4.8k
views
Use R/Bioconductor to match BLAST hits to GO terms?
GO
BLAST
annotation
updated 9.5 years ago by
Marc Carlson
★ 7.2k • written 9.5 years ago by
Jon Bråte
▴ 250
11 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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James W. MacDonald
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Pierre Lindenbaum
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Gordon Smyth
50k
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Jenny Drnevich
★ 2.0k
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