Bioconductor Blast

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4.4k

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annotation blast biostrings

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by Mathilde • 0

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8.3k

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blast

updated 7.7 years ago by Malcolm Cook ★ 1.6k • written 7.7 years ago by biomiha ▴ 20

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blast R

8.2 years ago maahpishanu • 0

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GO BLAST annotation

updated 9.5 years ago by Marc Carlson ★ 7.2k • written 9.6 years ago by Jon Bråte ▴ 250

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annotate blastSequences BLAST https

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by ariel.hecht • 0

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blast blastsequences

updated 6.0 years ago by James W. MacDonald 65k • written 6.0 years ago by aush ▴ 40

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blast annotate biostrings export fasta

9.5 years ago b.stielow • 0

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1.5k

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primer blast

updated 7.9 years ago by Hervé Pagès 16k • written 7.9 years ago by Vinicius Henrique da Silva ▴ 40

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351

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blast

14 months ago kvigil • 0

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843

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Biostrings blast variantannotation

7.7 years ago li lilingdu ▴ 450

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918

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R blast blastsequences protein

6.2 years ago andres.susrud • 0

11 results • Page 1 of 1

Recent ...

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Comment: PCA plot suggestions by JKim • 0

cross post: https://www.biostars.org/p/9593486/

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k

You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…

Votes

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0