Showing : blast • reset
0
votes
0
replies
351
views
Visualize blastx output in R
blast
14 months ago kvigil • 0
1
vote
2
replies
1.3k
views
blastn for selected database and/or organism
blast blastsequences
updated 6.0 years ago by 65k • written 6.0 years ago by ▴ 40
0
votes
0
replies
919
views
batch blast matrix of protein sequences from R
R blast blastsequences protein
6.2 years ago andres.susrud • 0
1
vote
2
replies
2.2k
views
blastSequences queries failing due to BLAST switch to https?
annotate blastSequences BLAST https
updated 7.6 years ago by 25k • written 7.6 years ago by • 0
3
votes
8
replies
8.3k
views
Which package to run blast
blast
updated 7.7 years ago by ★ 1.6k • written 7.7 years ago by ▴ 20
0
votes
0
replies
843
views
After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings blast variantannotation
7.7 years ago li lilingdu ▴ 450
0
votes
1
reply
1.5k
views
Primer-blast with bioconductor packages
primer blast
updated 7.9 years ago by 16k • written 7.9 years ago by ▴ 40
0
votes
5
replies
5.5k
views
Blastp - through R
blast R
8.2 years ago maahpishanu • 0
4
votes
13
replies
4.4k
views
How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation blast biostrings
updated 8.8 years ago by 25k • written 8.8 years ago by • 0
2
votes
2
replies
1.8k
views
BLAST export library 'annotate'
blast annotate biostrings export fasta
9.5 years ago b.stielow • 0
4
votes
3
replies
4.8k
views
Use R/Bioconductor to match BLAST hits to GO terms?
GO BLAST annotation
updated 9.5 years ago by ★ 7.2k • written 9.6 years ago by ▴ 250
11 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…
Answer: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Votes
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
United States, 9 minutes ago
United States, 11 minutes ago
United States, 13 minutes ago
France, 16 minutes ago
Spain, 39 minutes ago
Traffic: 845 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6