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Answer: DESeq function stuck on estimating gene-wise dispersion.
Sometimes using the parallelization hurts more than helps because you are sending a big dataset around on the cluster, and that becomes slo…
Comment: Installing DESEq2 Error: unable to access index for repository https://bioconduc
Am I correct in that you are running under Apple M1 BigSur from your sessionInfo()? If yes, could you please see this related post: https…
Answer: trackViewer peak visualization
Hi, Thanks for using trackViewer to plot your data. In current version of trackViewer, we don't have tracks for peak. There are two chea…
Answer: trackViewer bigWig smoothing
Hi, trackViewer will not recalculate the signals by bins. You may want to try preprocess the signals by other packages such as GenomicRa…
Answer: BLAST-like alignment of a DNAString to a BSgenome?
Hi Charles, One alternative I'm aware of is `annotate::blastSequences()` but I've no experience with it. Best, H.
A: standard error value (lfcSE) returned by DeSeq2
Comment: Model matrix not full rank, then
package ‘destiny’ is not available for Bioconductor version '3.13'
Answer: My "Ask a Question" post has been flagged as spam - it is not
A: DESeq2 for big data sets
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