Bioconductor Block

Showing : block • reset

votes

replies

5.5k

views

limma microarray block paired linear model

9.4 years ago • updated 9.3 years ago vas ▴ 40

votes

replies

3.0k

views

limma covariate block paired samples technical replicates

updated 8.4 years ago by Aaron Lun ★ 28k • written 8.4 years ago by eleonoregravier ▴ 70

votes

replies

8.3k

views

batch effect combat limma block

updated 8.6 years ago by Ryan C. Thompson ★ 7.9k • written 8.6 years ago by eleonoregravier ▴ 70

vote

replies

1.5k

views

deseq2 block pca

7.8 years ago akp • 0

votes

replies

1.8k

views

limma block design and contrast matrix

8.8 years ago choofd • 0

vote

replies

2.7k

views

batch effect Coeficents non estimable block random effects limma design matrix

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by mheydarpour ▴ 10

votes

replies

1.8k

views

limma microarray block

updated 6 months ago by Gordon Smyth 50k • written 5.2 years ago by tleona3 • 0

votes

replies

1.3k

views

time course block batch effect WGCNA

updated 7.1 years ago by Michael Love 41k • written 7.1 years ago by xie186 • 0

votes

replies

979

views

diffbind block regression deseq2 chipseq

updated 3.4 years ago by Rory Stark ★ 5.1k • written 4.5 years ago by melnuesch ▴ 10

votes

replies

2.0k

views

limma sva block

updated 2.1 years ago by stuartthafass • 0 • written 9.5 years ago by kodream ▴ 20

votes

replies

1.3k

views

limma roast mroast block

updated 7.8 years ago by Ryan C. Thompson ★ 7.9k • written 7.8 years ago by barbara.shih • 0

votes

1.3k

views

missmethyl diffvar design matrix limma block

updated 5.9 years ago by lhuang7 ▴ 50 • written 6.8 years ago by Simone ▴ 180

votes

927

views

limma BatchEffect duplicatecorrelation block batch

updated 3.4 years ago by Kevin Blighe ★ 3.9k • written 3.4 years ago by Katherine • 0

13 results • Page 1 of 1

Recent ...

Replies

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it always helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR? Are you starting with…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k

I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…

Comment: Single-Cell Data Simulation from Bulk RNA-seq by wichaidi • 0

Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.

Votes

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

DESeq2 variance transformation error and plot dispersion Estimate

A: DESeq2 variance transformation error and plot dispersion Estimate

ensembl to hgnc symbols creates duplicates

Awards • All