Biostar Blocking

Showing : blocking • reset

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273

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edgeR blocking

updated 13 months ago by Yunshun Chen ▴ 770 • written 13 months ago by Molly • 0

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451

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diffbind blocking model

updated 20 months ago by Rory Stark ★ 4.4k • written 2.7 years ago by melnuesch ▴ 10

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425

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edger limma paired blocking ruvseq

updated 2.1 years ago by Gordon Smyth 45k • written 2.1 years ago by ScA • 0

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368

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limma repeated measurements blocking random effects

updated 2.3 years ago by Gordon Smyth 45k • written 2.3 years ago by Jane • 0

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2.2k

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limma edger blocking paired samples

updated 3.6 years ago by Gordon Smyth 45k • written 3.6 years ago by anou ▴ 10

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520

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diffbind differential binding analysis blocking

updated 4.5 years ago by Rory Stark ★ 4.4k • written 4.5 years ago by zhangly811 • 0

6 results • Page 1 of 1

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Comment: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k

That's a problem related to your lack of R basics, neither DESeq2 or Bioconductor software/technical problem. Please learn R basics first. …

Comment: How to get DESeq2 results for a list of genes by Lucía ▴ 10

Hi, thank you! Unfortunately that doesn't work. The first option gives me this error: ``` # Extracting for list my_genes <- read.delim("di…

Comment: Error by ATpoint ★ 1.3k

https://github.com/conda-forge/rpy2-feedstock/issues/1

Comment: Error: BiocParallel errors by lxl13260684135 • 0

I came across the same problem, have you solved it?

Answer: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k

Standard rules apply for filtering in R. If the genes are the rownames of the results object `res` then: res[my_ges,] or if the colu…

Votes

C: DESEQ2 'results' filter by value for multiple conditions (contrast off?)

How to get DESeq2 results for a list of genes

Answer: setting sizeFactors from scran :: caculateSumFactors.

Answer: ComplexHeatmap: Change font size of annotation axis values

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Scholar to jaro.slamecka ▴ 130

Scholar to James W. MacDonald 60k

Teacher to Gordon Smyth 45k