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bootstrap
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Two Genotypes Four Treatments RNA-seq Analysis
salmon
rna-seq
swish
bootstrap
fishpond
updated 2.1 years ago by
Michael Love
41k • written 2.1 years ago by
samuelcjx
• 0
0
votes
6
replies
1.1k
views
tximport lose transcript names with Salmon bootstrap
salmon
tximport
bootstrap
updated 4.0 years ago by
julia.jefferson23
• 0 • written 4.0 years ago by
Cindy
• 0
0
votes
0
replies
894
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
6.0 years ago
Larry K.
• 0
0
votes
0
replies
847
views
Jackknifing/bootstrapping input and output question
jackknifing
R
microarray
bootstrap
6.7 years ago
bhgyu
▴ 30
1
vote
7
replies
1.5k
views
[GSVM] bootstrapping error
GSVM
bootstrap
snow
updated 7.2 years ago by
Robert Castelo
★ 3.1k • written 7.2 years ago by
mforde84
▴ 20
0
votes
1
reply
3.6k
views
ape - delete bootstrap values (node.labels) less than a certain value
ape
bootstrap
node
phylogenetic
tree
8.8 years ago
wd
▴ 30
0
votes
1
reply
1.6k
views
DESeq2 -- Bootstrap subsampling to estimate distribution of expression
deseq2
bootstrap
differential expression
updated 9.0 years ago by
Michael Love
41k • written 9.0 years ago by
David Eccles (gringer)
▴ 30
7 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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