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bootstrap
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3.6k
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ape - delete bootstrap values (node.labels) less than a certain value
ape
bootstrap
node
phylogenetic
tree
8.8 years ago
wd
▴ 30
0
votes
1
reply
1.6k
views
DESeq2 -- Bootstrap subsampling to estimate distribution of expression
deseq2
bootstrap
differential expression
updated 9.1 years ago by
Michael Love
41k • written 9.1 years ago by
David Eccles (gringer)
▴ 30
1
vote
7
replies
1.5k
views
[GSVM] bootstrapping error
GSVM
bootstrap
snow
updated 7.3 years ago by
Robert Castelo
★ 3.2k • written 7.3 years ago by
mforde84
▴ 20
1
vote
3
replies
1.4k
views
Two Genotypes Four Treatments RNA-seq Analysis
salmon
rna-seq
swish
bootstrap
fishpond
updated 2.2 years ago by
Michael Love
41k • written 2.2 years ago by
samuelcjx
• 0
0
votes
6
replies
1.1k
views
tximport lose transcript names with Salmon bootstrap
salmon
tximport
bootstrap
updated 4.1 years ago by
julia.jefferson23
• 0 • written 4.1 years ago by
Cindy
• 0
0
votes
0
replies
910
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
6.1 years ago
Larry K.
• 0
0
votes
0
replies
866
views
Jackknifing/bootstrapping input and output question
jackknifing
R
microarray
bootstrap
6.8 years ago
bhgyu
▴ 30
7 results • Page
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Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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