Bioconductor Boxplot

Showing : boxplot • reset

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346

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t.test boxplot limma anova

17 days ago • updated 16 days ago Chris • 0

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559

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boxplot ggplot2

updated 14 months ago by ATpoint ★ 4.0k • written 14 months ago by Sooni ▴ 10

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781

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knitr boxplot

updated 4.3 years ago by James W. MacDonald 65k • written 4.3 years ago by poojitha.stemcell ▴ 10

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993

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boxplot bioconductor R error

4.3 years ago l154359 • 0

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1.4k

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boxplot reads fastq sequencing rsubread

updated 4.9 years ago by Wei Shi ★ 3.6k • written 4.9 years ago by Raito92 ▴ 60

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728

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affy boxplot

5.0 years ago pratikshasharma47 • 0

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653

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boxplot affymetrix data diferential expression

5.1 years ago pratikshasharma47 • 0

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661

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boxplot software error

updated 5.1 years ago by Gordon Smyth 50k • written 5.1 years ago by Raito92 ▴ 60

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VST deseq2 boxplot rnaseq

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by Konstantinos Yeles ▴ 80

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973

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boxplot

updated 7.1 years ago by Peter Langfelder ★ 3.0k • written 7.1 years ago by farahqureshi5 • 0

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4.5k

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affy package boxplot hgu133plus2 oligo package

updated 7.1 years ago by James W. MacDonald 65k • written 7.1 years ago by Javier Pérez Florido ▴ 840

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edgeR boxplot

7.2 years ago snowru • 0

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2.0k

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gviz boxplot

updated 7.9 years ago by florian.hahne@novartis.com ★ 1.6k • written 8.0 years ago by enricoferrero ▴ 660

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boxplot microarray pd.hugene.2.0.st

9.0 years ago kanacska ▴ 10

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Rle boxplot

9.2 years ago Johannes Rainer ★ 2.0k

15 results • Page 1 of 1

Recent ...

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Votes

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0