Showing : brain • reset
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Creating a model matrix for three age groups using two-colour arrays
Microarray BRAIN Microarray BRAIN
updated 3.2 years ago by 50k • written 15.4 years ago by ▴ 10
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794
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Job: Data science research assistant position at Johns Hopkins
RNAseq R Next-Gen Sequencing Imaging Brain Job
5.0 years ago hjaarop1 • 0
0
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1
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1.1k
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CAGEr - How to change plot axis range in CAGEr
BRAIN CAGEr BRAIN CAGEr
updated 6.0 years ago by ▴ 180 • written 9.7 years ago by ▴ 10
1
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2
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1.9k
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How to proceed with different degradation levels of RNA-seq samples?
degradation RNA-seq variability differential expression brain
updated 7.0 years ago by ★ 28k • written 7.0 years ago by ▴ 90
0
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9
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2.6k
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frma and alternative CDFs
GO cdf frma BRAIN GO cdf frma BRAIN
updated 9.7 years ago by ▴ 830 • written 9.7 years ago by ★ 13k
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1.4k
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Job reminder: Open position for a Core Bioinformatician in Lund, Sweden
Microarray BRAIN Microarray BRAIN
10.7 years ago _Bio - Informatics ▴ 20
0
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0
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1.1k
views
Open position for a Core Bioinformatician in Lund, Sweden
Microarray BRAIN Microarray BRAIN
10.8 years ago _Bio - Informatics ▴ 20
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0
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918
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Error in example from biomaRt vignette
biomaRt BRAIN biomaRt BRAIN
11.0 years ago Steffen Durinck ▴ 90
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1.9k
views
Tukey\'s HSD after ANOVA
GO BRAIN GO BRAIN
11.0 years ago Guest User ★ 13k
0
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0
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737
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Differentially regulated genes
BRAIN BRAIN
11.2 years ago Ali Mohammadian ▴ 290
0
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1
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1.2k
views
log2 and rowMeans a problem?
BRAIN BRAIN
updated 11.4 years ago by ★ 4.3k • written 11.4 years ago by ▴ 20
0
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3
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1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
updated 11.8 years ago by 25k • written 11.8 years ago by 50k
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0
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1.2k
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edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
11.8 years ago alessandro.guffanti@genomnia.com ▴ 330
0
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1
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1.2k
views
Three tenure track assistant professorship openings at Inst. Behavioral Genetics, University of Colorado Boulder
Genetics BRAIN Genetics BRAIN
12.1 years ago Matthew Keller ▴ 100
0
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0
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873
views
What is the difference of layout between genepix scanner & agilent scanner
limma BRAIN limma BRAIN
12.5 years ago 이선재 ▴ 30
0
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1
reply
1.2k
views
[question] integration of microarray data from different sources in limma package
Microarray limma BRAIN Microarray limma BRAIN
updated 12.5 years ago by ▴ 340 • written 12.5 years ago by ▴ 30
0
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1
reply
916
views
[question] integration of microarray data from different sources in limma package
Microarray limma BRAIN Microarray limma BRAIN
updated 12.6 years ago by ▴ 150 • written 12.6 years ago by ▴ 30
0
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7
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1.6k
views
EBS volumes with the Bioconductor AMI: how to change default behaviour
PROcess BRAIN PROcess BRAIN
12.7 years ago Dan Tenenbaum ★ 8.2k
0
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2
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1.2k
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EBS volumes with the Bioconductor AMI: how to change default behaviour
BRAIN BRAIN
12.7 years ago Quin Wills ▴ 80
0
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1
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3.0k
views
2 way anova in Bioconductor
Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN
updated 12.8 years ago by ▴ 210 • written 12.8 years ago by ▴ 110
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0
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765
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How to: design matrices for multi organism parts experiment
Organism BRAIN Organism BRAIN
12.9 years ago Hans ▴ 10
0
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3
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1.3k
views
How to filter a list of SNPs?
BRAIN BRAIN
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 450
0
votes
1
reply
1.7k
views
Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
updated 13.1 years ago by ▴ 80 • written 13.1 years ago by ▴ 620
0
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0
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978
views
Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
13.4 years ago Pan Du ★ 1.2k
0
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3
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1.2k
views
Microarray experiments with Drosophilas (miniscule amounts of RNA, cheap organisms)
Microarray BRAIN Microarray BRAIN
updated 13.5 years ago by ▴ 10 • written 13.5 years ago by ▴ 40
0
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0
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785
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How to avoid losing a sample as reference running an individual differential expression analysis (LIMMA)
Microarray limma BRAIN Microarray limma BRAIN
15.2 years ago Gordon Smyth 50k
0
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0
replies
759
views
How to avoid losing a sample as reference running an individual differential expression analysis (LIMMA)
Microarray limma BRAIN Microarray limma BRAIN
15.2 years ago Dmitriy Verkhoturov ▴ 10
0
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3
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1.2k
views
problems with paired design in limma
Microarray BRAIN Microarray BRAIN
15.4 years ago Michael Walter ▴ 160
0
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0
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796
views
Creating a model matrix for three age groups using two-colour arrays
Microarray limma BRAIN Microarray limma BRAIN
15.4 years ago Gordon Smyth 50k
0
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4
replies
1.7k
views
allen brain atlas
Genetics Annotation BRAIN Genetics Annotation BRAIN
updated 15.7 years ago by 25k • written 15.7 years ago by ▴ 60
0
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0
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749
views
MAQC samples on Affymarix Exon array
BRAIN BRAIN
15.7 years ago Weiyin Zhou ▴ 20
0
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5
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1.3k
views
P-values for tissue specific genes
BRAIN BRAIN
15.8 years ago Pascal Gellert ▴ 30
0
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1
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1.1k
views
new lumi and miRNA array data
Microarray Normalization lumi BRAIN Microarray Normalization lumi BRAIN
updated 16.0 years ago by ★ 13k • written 16.0 years ago by ▴ 830
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2
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1.5k
views
new topGO results using GO.db very different from old ones using GO
GO annotate topGO BRAIN GO annotate topGO BRAIN
updated 16.0 years ago by ▴ 400 • written 16.0 years ago by ▴ 730
0
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0
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823
views
The above Feelgood Formula enshrines the common philosophy that the better you treat people, the better they will work.
Pathways PROcess BRAIN Pathways PROcess BRAIN
16.8 years ago Neddy ▴ 10
0
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0
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1.0k
views
Undergraduate Student Project Summer 2007, at EBI: the synapse and the brain
Pathways BRAIN Pathways BRAIN
17.2 years ago Wolfgang Huber ★ 13k
0
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0
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766
views
read.maimages broken (limma 2.9.10)?
limma BRAIN limma BRAIN
17.2 years ago Gordon Smyth 50k
0
votes
0
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768
views
read.maimages broken (limma 2.9.10)?
BRAIN BRAIN
17.2 years ago Koen Bossers ▴ 10
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0
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1.1k
views
microarray analysis of a dose response * strain experiment
Microarray affy limma maSigPro DOSE BRAIN Microarray affy limma maSigPro DOSE BRAIN
17.5 years ago Naomi Altman ★ 6.0k
0
votes
4
replies
1.4k
views
microarray analysis of a dose response * strain experiment
affy DOSE BRAIN affy DOSE BRAIN
updated 17.5 years ago by 21k • written 17.5 years ago by ▴ 890
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0
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925
views
4 replicates, of 3 tissues- one good hyb (2xreps), one bad hyb (2xreps). Best way forward?
qPCR affy affydata vsn limma gcrma matchprobes affyPLM affyio BRAIN qPCR affy affydata
17.6 years ago k. brand ▴ 420
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1
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1.1k
views
GCRMA
Microarray Preprocessing gcrma BRAIN Microarray Preprocessing gcrma BRAIN
updated 18.2 years ago by ★ 2.0k • written 18.2 years ago by ▴ 20
0
votes
3
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1.4k
views
LIMMA lmscFit: difference between linear models
BRAIN BRAIN
18.6 years ago Koen Bossers ▴ 20
0
votes
3
replies
1.0k
views
limma design matrix
affy BRAIN affy BRAIN
updated 19.3 years ago by ▴ 720 • written 19.3 years ago by ▴ 250
0
votes
1
reply
1.3k
views
Cluster analysis distance measuer
Microarray Annotation Normalization Clustering Cancer affy limma AnnBuilder BRAIN Cancer
updated 19.4 years ago by ▴ 110 • written 19.4 years ago by ▴ 250
0
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0
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878
views
help with limma contrast matrix
BRAIN BRAIN
19.5 years ago Kimpel, Mark W ▴ 890
0
votes
3
replies
1.4k
views
human tissue specific genes
BRAIN BRAIN
updated 19.7 years ago by 21k • written 19.7 years ago by ▴ 80
0
votes
0
replies
1.5k
views
New Alzheimer's disease microarray data set available
Microarray BRAIN Microarray BRAIN
19.8 years ago Eric Blalock ▴ 250
0
votes
0
replies
724
views
Overriding maPrintTip method
BRAIN BRAIN
20.2 years ago Kellie J. Archer, Ph.D. ▴ 120
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votes
0
replies
834
views
Q-value package now available
BRAIN BRAIN
20.4 years ago Warnes, Gregory R ▴ 460
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
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Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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