Showing : brain • reset
0
votes
9
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2.6k
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frma and alternative CDFs
GO cdf frma BRAIN GO cdf frma BRAIN
updated 9.7 years ago by ▴ 830 • written 9.8 years ago by ★ 13k
0
votes
7
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1.6k
views
EBS volumes with the Bioconductor AMI: how to change default behaviour
PROcess BRAIN PROcess BRAIN
12.7 years ago Dan Tenenbaum ★ 8.2k
0
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5
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1.3k
views
P-values for tissue specific genes
BRAIN BRAIN
15.8 years ago Pascal Gellert ▴ 30
0
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4
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1.5k
views
microarray analysis of a dose response * strain experiment
affy DOSE BRAIN affy DOSE BRAIN
updated 17.5 years ago by 21k • written 17.5 years ago by ▴ 890
0
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4
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1.7k
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allen brain atlas
Genetics Annotation BRAIN Genetics Annotation BRAIN
updated 15.7 years ago by 25k • written 15.7 years ago by ▴ 60
0
votes
3
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1.4k
views
LIMMA lmscFit: difference between linear models
BRAIN BRAIN
18.6 years ago Koen Bossers ▴ 20
0
votes
3
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1.2k
views
Microarray experiments with Drosophilas (miniscule amounts of RNA, cheap organisms)
Microarray BRAIN Microarray BRAIN
updated 13.5 years ago by ▴ 10 • written 13.5 years ago by ▴ 40
0
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3
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1.4k
views
human tissue specific genes
BRAIN BRAIN
updated 19.7 years ago by 21k • written 19.7 years ago by ▴ 80
0
votes
3
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1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
updated 11.8 years ago by 25k • written 11.8 years ago by 50k
0
votes
3
replies
1.0k
views
limma design matrix
affy BRAIN affy BRAIN
updated 19.3 years ago by ▴ 720 • written 19.3 years ago by ▴ 250
0
votes
3
replies
1.3k
views
How to filter a list of SNPs?
BRAIN BRAIN
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 450
0
votes
3
replies
1.2k
views
problems with paired design in limma
Microarray BRAIN Microarray BRAIN
15.4 years ago Michael Walter ▴ 160
0
votes
2
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1.2k
views
EBS volumes with the Bioconductor AMI: how to change default behaviour
BRAIN BRAIN
12.7 years ago Quin Wills ▴ 80
0
votes
2
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1.5k
views
new topGO results using GO.db very different from old ones using GO
GO annotate topGO BRAIN GO annotate topGO BRAIN
updated 16.0 years ago by ▴ 400 • written 16.0 years ago by ▴ 730
1
vote
2
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1.9k
views
How to proceed with different degradation levels of RNA-seq samples?
degradation RNA-seq variability differential expression brain
updated 7.0 years ago by ★ 28k • written 7.1 years ago by ▴ 90
0
votes
1
reply
1.3k
views
Cluster analysis distance measuer
Microarray Annotation Normalization Clustering Cancer affy limma AnnBuilder BRAIN Cancer
updated 19.5 years ago by ▴ 110 • written 19.5 years ago by ▴ 250
0
votes
1
reply
1.3k
views
Creating a model matrix for three age groups using two-colour arrays
Microarray BRAIN Microarray BRAIN
updated 3.2 years ago by 50k • written 15.4 years ago by ▴ 10
0
votes
1
reply
1.2k
views
log2 and rowMeans a problem?
BRAIN BRAIN
updated 11.4 years ago by ★ 4.3k • written 11.4 years ago by ▴ 20
0
votes
1
reply
1.1k
views
CAGEr - How to change plot axis range in CAGEr
BRAIN CAGEr BRAIN CAGEr
updated 6.0 years ago by ▴ 180 • written 9.7 years ago by ▴ 10
0
votes
1
reply
1.1k
views
new lumi and miRNA array data
Microarray Normalization lumi BRAIN Microarray Normalization lumi BRAIN
updated 16.0 years ago by ★ 13k • written 16.0 years ago by ▴ 830
0
votes
1
reply
3.0k
views
2 way anova in Bioconductor
Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN
updated 12.8 years ago by ▴ 210 • written 12.8 years ago by ▴ 110
0
votes
1
reply
1.1k
views
GCRMA
Microarray Preprocessing gcrma BRAIN Microarray Preprocessing gcrma BRAIN
updated 18.3 years ago by ★ 2.0k • written 18.3 years ago by ▴ 20
0
votes
1
reply
1.2k
views
[question] integration of microarray data from different sources in limma package
Microarray limma BRAIN Microarray limma BRAIN
updated 12.6 years ago by ▴ 340 • written 12.6 years ago by ▴ 30
0
votes
1
reply
920
views
[question] integration of microarray data from different sources in limma package
Microarray limma BRAIN Microarray limma BRAIN
updated 12.6 years ago by ▴ 150 • written 12.6 years ago by ▴ 30
0
votes
1
reply
1.7k
views
Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
updated 13.1 years ago by ▴ 80 • written 13.1 years ago by ▴ 620
0
votes
1
reply
1.2k
views
Three tenure track assistant professorship openings at Inst. Behavioral Genetics, University of Colorado Boulder
Genetics BRAIN Genetics BRAIN
12.1 years ago Matthew Keller ▴ 100
0
votes
0
replies
1.4k
views
Job reminder: Open position for a Core Bioinformatician in Lund, Sweden
Microarray BRAIN Microarray BRAIN
10.8 years ago _Bio - Informatics ▴ 20
0
votes
0
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797
views
Job: Data science research assistant position at Johns Hopkins
RNAseq R Next-Gen Sequencing Imaging Brain Job
5.0 years ago hjaarop1 • 0
0
votes
0
replies
825
views
Re: NormalizeForPrintorder
BRAIN BRAIN
20.9 years ago Gordon Smyth 50k
0
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0
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821
views
Re: Additional questions regarding LIMMA
Normalization BRAIN Normalization BRAIN
20.9 years ago Gordon Smyth 50k
0
votes
0
replies
811
views
Re: LIMMA
Normalization BRAIN ASSIGN Normalization BRAIN ASSIGN
20.9 years ago Gordon Smyth 50k
0
votes
0
replies
836
views
Q-value package now available
BRAIN BRAIN
20.4 years ago Warnes, Gregory R ▴ 460
0
votes
0
replies
724
views
Overriding maPrintTip method
BRAIN BRAIN
20.2 years ago Kellie J. Archer, Ph.D. ▴ 120
0
votes
0
replies
1.5k
views
New Alzheimer's disease microarray data set available
Microarray BRAIN Microarray BRAIN
19.8 years ago Eric Blalock ▴ 250
0
votes
0
replies
879
views
help with limma contrast matrix
BRAIN BRAIN
19.5 years ago Kimpel, Mark W ▴ 890
0
votes
0
replies
932
views
4 replicates, of 3 tissues- one good hyb (2xreps), one bad hyb (2xreps). Best way forward?
qPCR affy affydata vsn limma gcrma matchprobes affyPLM affyio BRAIN qPCR affy affydata
17.6 years ago k. brand ▴ 420
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0
replies
1.1k
views
microarray analysis of a dose response * strain experiment
Microarray affy limma maSigPro DOSE BRAIN Microarray affy limma maSigPro DOSE BRAIN
17.5 years ago Naomi Altman ★ 6.0k
0
votes
0
replies
769
views
read.maimages broken (limma 2.9.10)?
BRAIN BRAIN
17.2 years ago Koen Bossers ▴ 10
0
votes
0
replies
768
views
read.maimages broken (limma 2.9.10)?
limma BRAIN limma BRAIN
17.2 years ago Gordon Smyth 50k
0
votes
0
replies
1.0k
views
Undergraduate Student Project Summer 2007, at EBI: the synapse and the brain
Pathways BRAIN Pathways BRAIN
17.2 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
824
views
The above Feelgood Formula enshrines the common philosophy that the better you treat people, the better they will work.
Pathways PROcess BRAIN Pathways PROcess BRAIN
16.8 years ago Neddy ▴ 10
0
votes
0
replies
751
views
MAQC samples on Affymarix Exon array
BRAIN BRAIN
15.7 years ago Weiyin Zhou ▴ 20
0
votes
0
replies
798
views
Creating a model matrix for three age groups using two-colour arrays
Microarray limma BRAIN Microarray limma BRAIN
15.4 years ago Gordon Smyth 50k
0
votes
0
replies
760
views
How to avoid losing a sample as reference running an individual differential expression analysis (LIMMA)
Microarray limma BRAIN Microarray limma BRAIN
15.2 years ago Dmitriy Verkhoturov ▴ 10
0
votes
0
replies
786
views
How to avoid losing a sample as reference running an individual differential expression analysis (LIMMA)
Microarray limma BRAIN Microarray limma BRAIN
15.2 years ago Gordon Smyth 50k
0
votes
0
replies
981
views
Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
13.4 years ago Pan Du ★ 1.2k
0
votes
0
replies
767
views
How to: design matrices for multi organism parts experiment
Organism BRAIN Organism BRAIN
12.9 years ago Hans ▴ 10
0
votes
0
replies
876
views
What is the difference of layout between genepix scanner & agilent scanner
limma BRAIN limma BRAIN
12.5 years ago 이선재 ▴ 30
0
votes
0
replies
1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
11.8 years ago alessandro.guffanti@genomnia.com ▴ 330
0
votes
0
replies
739
views
Differentially regulated genes
BRAIN BRAIN
11.2 years ago Ali Mohammadian ▴ 290
50 results • Page 1 of 1
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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error by Fara • 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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