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Answer: EdgeR model matrix
by
James W. MacDonald
62k
It's not missing. You are using a treatments contrast, where one level is defined as the baseline (the intercept), and all other levels are…
Answer: Create an Annotation DB file for a non-model organism
by
James W. MacDonald
62k
You can make an `OrgDb` package using `makeOrgPackage` from the `AnnotationForge` package.
Comment: Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
by
Ben J
•
0
Many thanks for the advice - I will try this and get back to you if I have further issues.
BW
Ben
Comment: nullranges
by
Michael Love
39k
Let's discuss a few of the points of bootRanges:
* `blockLength` - you want this to be larger than the typical clustering pattern but smal…
Comment: stat_compare_means function - Error 'must have same length'
by
Basti
▴
540
Have you tried to replace `method` by `test`? `stat_compare_means(comparisons = my_comparisons, label="p.signif", test = 'kruskal.test' ...…
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