Recent ...
Replies
Comment: Agilent Microarray Gene Oncology analysis gone wrong
by
SamGG
▴
320
Gordon said to let coef to its default value:
topTable(fit, n=20)
Comment: Can the limma package be applied to Log2 RUV-normalized data?
by
Shaimaa Gamal
•
0
Hi Gordon,
On what basis we can determine whether the dataset is large or not? I am working on a dataset of 515 samples and 5440 genes. I w…
Comment: Agilent Microarray Gene Oncology analysis gone wrong
by
samagbeyimodupe
•
0
Thank you for the quick response. i ran the codes again and removed all the other arguments for eBayes except for fit.
I ran the line of co…
Comment: Correct the batch effect in methylation analysis in R
by
Gordon Smyth
49k
> Is it okay to apply removeBatchEffect before a limma analysis(limma linear model)?
No, you should not apply any batch correction before …
Comment: Correct the batch effect in methylation analysis in R
by
kyj2226
•
0
Thank you for your response Gordon :)
I've already run the code below, just add batch to the limma linear model
design <- model.matri…
Awards
• All
Popular Question to
Gordon Smyth
49k
Popular Question to
Lluís Revilla Sancho
▴
720
Popular Question to
Frederik Ziebell
▴
20
Popular Question to
Sam
▴
10
Scholar to
Rory Stark
★
5.1k
Locations
• All
Wageningen University, Wageningen, the Netherlands, 12 minutes ago
Russia, 20 minutes ago
Russia, 38 minutes ago
Russia, 39 minutes ago
United States, 50 minutes ago
Wageningen University, Wageningen, the Netherlands, 12 minutes ago
Russia, 20 minutes ago
Russia, 38 minutes ago
Russia, 39 minutes ago
United States, 50 minutes ago
Traffic: 634 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6