Biostar Bsgenome.hsapiens.ucsc.hg38

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BSgenome.Hsapiens.UCSC.hg38

updated 24 months ago by ahorn720 ▴ 10 • written 2.1 years ago by rohitsatyam102 ▴ 20

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 3.0 years ago by kayla.interdonato 140 • written 3.0 years ago by jam526 • 0

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org.Hs.eg.db BSgenome.Hsapiens.UCSC.hg38

2.0 years ago Konstantinos Yeles ▴ 70

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BSgenome.Hsapiens.UCSC.hg38 BSgenome.Hsapiens.UCSC.hg38.masked

9 months ago Bogdan ▴ 660

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HiCDCPlus BSgenome.Hsapiens.UCSC.hg38

7 weeks ago Yue • 0

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Comment: Ascona Workshop “Biological systems: from first principles to data-driven model by Wolfgang Huber 13k

Dear Liam, it's bi-annual, we just submitted a proposal. If it works out, it'll be in 2024, and as it looks now, in early September. Theme:…

Comment: IHW for multiple regression by Wolfgang Huber 13k

Indeed, for the two-sided t-test (and similar), the sign of the test statistic is independent of the p-value under the null hypothesis, and…

Comment: edgeR supports continuous covariates? by Jeffcgen2000 • 0

Hi Yunshun Chen and Gordon Smyth, does edgeR support mixed model? (https://en.wikipedia.org/wiki/Mixed_model)

Comment: find tandem repeats in DNA by me-nobody • 0

OK. Thank you very much!

Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Bernardo • 0

Discussion for this question continuing on Biostars: https://www.biostars.org/p/9552419/

Votes

A: edgeR: exactTest, glmFIt or glmQLFit approach?

Answer: on which data type limma::removeBatchEffect can be applyed?

C: WGCNA: Understanding module-trait correlations

A: WGCNA: Understanding module-trait correlations

A: Differential expression analysis starting from TPM data

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Scholar to elefth.pavlos ▴ 30

Scholar to Gordon Smyth 47k