Bioconductor Bsgenome

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BSgenome

updated 7 weeks ago by James W. MacDonald 65k • written 10 weeks ago by Kate • 0

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563

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SNPlocs BSgenome

written 6 months ago by Stevie Pederson • 0

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501

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OrgDb BSgenome

5 months ago • updated 10 weeks ago mat149 ▴ 70

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899

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BSgenomeForge BSgenome

updated 10 months ago by James W. MacDonald 65k • written 10 months ago by kyliecode • 0

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845

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BSgenome

updated 3 months ago by eviatar.weizman • 0 • written 23 months ago by remerandmaxence ▴ 10

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668

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intron BSgenome.Hsapiens.UCSC.hg38 BSgenome

updated 10 months ago by ATpoint ★ 4.0k • written 10 months ago by Lillian • 0

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724

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bsgenome GenomicFeatures package

updated 10 months ago by Hervé Pagès 16k • written 11 months ago by Manish • 0

7 results • Page 1 of 1

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Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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