Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
bsgenome
•
reset
2
votes
4
replies
496
views
Need help generating BSgenome and orgdb
OrgDb
BSgenome
5 months ago • updated 10 weeks ago
mat149
▴ 70
2
votes
3
replies
843
views
Request : Add Chinese Spring Wheat genome to BSgenome
BSgenome
updated 3 months ago by
eviatar.weizman
• 0 • written 23 months ago by
remerandmaxence
▴ 10
1
vote
4
replies
723
views
Submitting BSgenome package for a new assembly
bsgenome
GenomicFeatures
package
updated 10 months ago by
Hervé Pagès
16k • written 10 months ago by
Manish
• 0
1
vote
6
replies
704
views
Help creating BSgenome object for new canine and feline genomes?
BSgenome
updated 7 weeks ago by
James W. MacDonald
65k • written 9 weeks ago by
Kate
• 0
1
vote
3
replies
561
views
Using injectSNPs with a custom set of SNPs
SNPlocs
BSgenome
written 6 months ago by
Stevie Pederson
• 0
0
votes
3
replies
664
views
Get Intron Seq
intron
BSgenome.Hsapiens.UCSC.hg38
BSgenome
updated 10 months ago by
ATpoint
★ 4.0k • written 10 months ago by
Lillian
• 0
0
votes
4
replies
892
views
BSgenome for ensembl mm10
BSgenomeForge
BSgenome
updated 10 months ago by
James W. MacDonald
65k • written 10 months ago by
kyliecode
• 0
7 results • Page
1 of 1
Recent ...
Replies
Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it always helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR? Are you starting with…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
Awards
• All
Popular Question
to
paria.alipour
• 0
Popular Question
to
Eman
• 0
Popular Question
to
James W. MacDonald
65k
Scholar
to
nhaus
▴ 30
Popular Question
to
shepherl
3.8k
Locations
• All
United States,
just now
France,
1 minute ago
United States,
32 minutes ago
WEHI, Melbourne, Australia,
36 minutes ago
United States,
1 hour ago
Traffic: 443 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6