Bioconductor Bsseq

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285

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dmrseq bsseq

updated 20 hours ago by Peter Hickey ▴ 740 • written 7 days ago by Juan Higareda • 0

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125

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bsseq methylation

updated 16 days ago by James W. MacDonald 65k • written 17 days ago by ja569116 • 0

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1.1k

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bsseq

updated 7 months ago by Peter Hickey ▴ 740 • written 8 months ago by richardallenfriedmanbrooklyn ▴ 20

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2.6k

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Coverage bsseq

updated 5 months ago by Adam • 0 • written 9.6 years ago by Guest User ★ 13k

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2.5k

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bsseq Bsmooth

updated 5 months ago by Adam • 0 • written 9.1 years ago by unmeshj • 0

5 results • Page 1 of 1

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Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by sredemption • 0

Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you for your reply and I know there is another post similar to this you had mentioned this. How are the genes that I mentioned in the…

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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

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