Showing : bsseq • reset
0
votes
4
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2.6k
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Error using Bsmooth.tstat due to NAs
Coverage bsseq
updated 5 months ago by • 0 • written 9.6 years ago by ★ 13k
0
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3
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2.5k
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How to handle BSsmooth.tstat for single replicate samples? Error: need at least two non-NA values to interpolate
bsseq Bsmooth
updated 5 months ago by • 0 • written 9.1 years ago by • 0
6
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5
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1.1k
views
error message when I use the bsseq read.bismark command to read a genome wide cytosine report generated by bismark.
bsseq
updated 7 months ago by ▴ 710 • written 8 months ago by ▴ 20
4
votes
8
replies
269
views
Memory errors using read.bismark?
dmrseq bsseq
updated 53 minutes ago by ▴ 710 • written 6 days ago by • 0
0
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1
reply
124
views
No output from read.bismark with bismark cov.files
bsseq methylation
updated 15 days ago by 65k • written 17 days ago by • 0
5 results • Page 1 of 1
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Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq by wichaidi • 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Comment: Methylation Analysis experiment design using Limma by hortense96 • 0
Hi, Thank you very much for your answer. It's true that I only used 6 samples for this analysis, which is consistent with your explanation…
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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