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bufferedmatrix
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Reading CEL files in using BufferedMatrix.justRMA
BufferedMatrix
BufferedMatrix
11.2 years ago
Emma Reick
▴ 10
0
votes
0
replies
741
views
Creating one matrix of intensity data from 4 diffrent CEL files
Normalization
cdf
probe
affy
BufferedMatrix
Normalization
cdf
probe
affy
BufferedMatrix
14.8 years ago
Radhika Ambatipudi
▴ 20
0
votes
0
replies
880
views
Oligo package and tiling arrays - PM and MM
cdf
affyio
oligo
BufferedMatrix
cdf
affyio
oligo
BufferedMatrix
16.4 years ago
Naira Naouar
▴ 140
0
votes
3
replies
1.4k
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pd.mapping 10Karray
BiocViews
cdf
affyio
biocViews
oligo
pdInfoBuilder
BufferedMatrix
BiocViews
BiocViews
cdf
updated 16.7 years ago by
Seth Falcon
★ 7.4k • written 16.7 years ago by
Marianne Tuefferd
▴ 10
0
votes
1
reply
1000
views
Problem with snprma
SNP
Biobase
oligo
BufferedMatrix
SNP
Biobase
oligo
BufferedMatrix
updated 16.9 years ago by
Benilton Carvalho
★ 4.3k • written 16.9 years ago by
OLIVIERNUĂ‘EZ
▴ 80
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Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
I am not sure how your comment helps here?
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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