Showing : bug • reset
1
vote
5
replies
572
views
Manual creation of qPCRset does not work
bug nondetects HTqPCR
updated 6 months ago by • 0 • written 7 months ago by ▴ 230
0
votes
1
reply
818
views
Bug: MOFA2 sets an environment variable that breaks knit in RStudio
RStudio MOFA2 bug knitr
updated 18 months ago by 65k • written 18 months ago by ▴ 430
0
votes
0
replies
544
views
Hopach: distancematrix and distancevector do not return identical results
documentation bug hopach euclidean distance
2.2 years ago txema.heredia • 0
4
votes
2
replies
818
views
TENxPBMCData error loading PBMC4k data
bug TENxPBMCData
3.5 years ago zhe ▴ 20
3
votes
4
replies
1.6k
views
Different geneset same p-values in topGO
topgo bug
7.3 years ago • updated 3.6 years ago Lluís Revilla Sancho ▴ 730
0
votes
1
reply
1.2k
views
pheatmap needs to be manually added to plot heatmaps
singler bug
4.0 years ago muad.abdelhay ▴ 10
0
votes
0
replies
872
views
[DSS] callDMR - dis.merge option does not seem to be working
DSS bug troubleshooting callDMR
4.4 years ago matthew.kearney • 0
0
votes
4
replies
1.3k
views
Inconsistent geo_char for rse_tx
bug recount
5.3 years ago • updated 4.5 years ago Jacques.van-Helden • 0
0
votes
3
replies
892
views
collapseReplicates changes order of factors
deseq2 bug
5.4 years ago António Miguel de Jesus Domingues ▴ 490
0
votes
5
replies
911
views
GenomicFeatures supportedUCSCFeatureDbTracks never returns and has to be terminated with C-c
genomicfeatures bug
updated 5.4 years ago by 65k • written 5.4 years ago by ★ 1.6k
0
votes
1
reply
1.0k
views
A recent update to readr cause issues loading data with GEOquery 2.50.0
version compatibility bug
updated 5.4 years ago by ★ 13k • written 5.4 years ago by • 0
0
votes
7
replies
2.2k
views
DEXSeqHTML getListElement GRanges error
dexseq software error bug
updated 5.4 years ago by ▴ 140 • written 5.4 years ago by • 0
0
votes
0
replies
712
views
bug found in restfulSE::BQ3_Array/repaired
bug
5.7 years ago Vincent J. Carey, Jr. 6.7k
0
votes
1
reply
1.1k
views
DelayedArray install fails to UNC path
delayedarray bug installation
updated 5.7 years ago by 25k • written 5.8 years ago by • 0
0
votes
0
replies
736
views
shinyTANDEM web GUI doesn't render properly
shinytandem bug
5.9 years ago Ed Siefker ▴ 230
1
vote
1
reply
1.0k
views
rTandem compilation failed
rtandem bug compilation error
5.9 years ago Ed Siefker ▴ 230
1
vote
3
replies
1.0k
views
SeqPattern plotPatternOccurrenceAverage problem
SeqPattern bug
5.9 years ago elisheva.h02 • 0
0
votes
13
replies
1.9k
views
R 3.5.0/Bioconductor version 3.6: OS-dependent behavior divergence for list concatenation of SummarizedExperiment
summarizedexperiment bug 3.5.0
updated 5.9 years ago by 65k • written 5.9 years ago by • 0
1
vote
1
reply
1.1k
views
Bug in Biostrings DNAStringSet(), segfault
bug biostrings
updated 6.2 years ago by 25k • written 6.2 years ago by ▴ 10
3
votes
2
replies
1.9k
views
coverage() output SimpleRleList cannot be converted to GRanges
bug genomicranges granges rlelist coverage
updated 6.2 years ago by 16k • written 6.2 years ago by ▴ 10
0
votes
4
replies
1.3k
views
problem with get_link function
STRINGdb get_link bug
6.3 years ago cristinapasi • 0
5
votes
16
replies
2.3k
views
GSVA package scores are opposite on mac and windows
GSVA bug gsva bugs
updated 6.6 years ago by ★ 3.3k • written 6.6 years ago by ▴ 10
0
votes
1
reply
913
views
GenomicRanges: Possible Bug
genomicranges bug
updated 6.6 years ago by 65k • written 6.6 years ago by • 0
0
votes
0
replies
921
views
[RCircos] Examples flagged as not run
rcircos bug
6.6 years ago Marcel Ramos 690
2
votes
1
reply
1.5k
views
Possible bug: outdated result from listDatabases()
KEGGREST bug
updated 6.7 years ago by ▴ 50 • written 6.7 years ago by • 0
2
votes
1
reply
1.9k
views
Cummerbund error column name mismatch
cummerbund bug error
6.8 years ago tannerndrsn4 ▴ 20
0
votes
0
replies
942
views
sangerseqR::read.abif reads float data incorrectly on little-endian systems
sangerseqR bug
7.0 years ago brendan.furneaux ▴ 10
0
votes
4
replies
1.7k
views
beadarray: readIllumina with sample sheet broken due to Illumina switching to 12 digit chip identifiers
beadarray bug illumina human ht-12 v4 illumina beadchip
updated 7.0 years ago by ★ 1.1k • written 7.0 years ago by • 0
0
votes
0
replies
1.2k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos bug hg19 hg18 data
7.0 years ago matthew.bashton • 0
1
vote
2
replies
1.2k
views
BiocCheck path escape issue
bioccheck bug
7.0 years ago Michael Steinbaugh ▴ 90
3
votes
2
replies
1.4k
views
Crash GSVA 1.24.0 with bootstrapping
GSVA bug
updated 7.0 years ago by ★ 3.3k • written 7.0 years ago by ▴ 20
0
votes
0
replies
1.0k
views
beadarray: Make grep in readSamplesheet case insensitive
beadarray bug
7.0 years ago S. K. • 0
3
votes
4
replies
1.2k
views
Does Rsamtools support tag names with number characters? i.e ."B1"
rsamtools bug
updated 7.1 years ago by 25k • written 7.1 years ago by • 0
9
votes
2
replies
8.8k
views
Using RSEM with tximport and DESeq2
deseq2 tximport software error bug
updated 2.6 years ago by 41k • written 7.2 years ago by ▴ 10
0
votes
2
replies
1.7k
views
Problem with GeneSetCollection after updating R devel packages.
bug gseabase example
7.2 years ago jcrodriguez ▴ 20
3
votes
2
replies
2.5k
views
Rqc - envir must be either NULL, a list, or an environment.
software error bug library
updated 7.2 years ago by ▴ 70 • written 7.2 years ago by ▴ 10
1
vote
2
replies
1.4k
views
Error in Biostrings with Fastafiles using the carriage return <cr>
biostrings software error bug
updated 7.2 years ago by 16k • written 7.3 years ago by • 0
2
votes
3
replies
1.2k
views
Probable bug in GSEABase package.
software error bug gseabase
7.2 years ago jcrodriguez ▴ 20
1
vote
2
replies
1.9k
views
Error when using multiple heatmaps in ComplexHeatmaps
ComplexHeatmap bug
7.3 years ago brt381 • 0
3
votes
5
replies
1.7k
views
Selecting few ids from reactome.db
annotationdbi reactome.db bug
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 730
0
votes
2
replies
1.4k
views
Problem with VariantAnnotation and VCF "R" genotype fields when expanding CollapsedVCF
VariantAnnotation bug
updated 7.4 years ago by ★ 6.8k • written 7.4 years ago by 21k
0
votes
0
replies
923
views
Error in pr_DB$get_entry(method) : could not find function "f"
destiny software error bug
7.4 years ago mrodriguezorejuela • 0
2
votes
4
replies
2.1k
views
topGO crashes with ' argument "annotationFun" is missing, with no default'
bug topGO
updated 7.4 years ago by 65k • written 7.4 years ago by ▴ 160
0
votes
2
replies
1.2k
views
class "AsIs" is not valid for @'dataset' in an object of class "Mart"; is(value, "character")
bug biomart
7.4 years ago Philip Lijnzaad ▴ 160
0
votes
5
replies
1.3k
views
GRanges nearest fails for non-overlapping regions
bug genomicranges granges nearest
7.5 years ago dondelelcaro ▴ 10
3
votes
3
replies
2.6k
views
Transcripts in TxDb.Hsapiens.UCSC.hg38.knownGene but not in ucsc genome brower
annotation txdb.hsapiens.ucsc.hg38.knowngene bug
7.5 years ago shilin.zhao ▴ 40
1
vote
1
reply
1.7k
views
GSEABase getGmt() fails when more than 1 line contains duplicates
gseabase bug
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 10
0
votes
2
replies
4.8k
views
Possible bug in Biostrings::readAAStringSet
bug biostrings readAAStringSet
updated 7.6 years ago by ★ 1.2k • written 7.6 years ago by • 0
0
votes
0
replies
861
views
[bug] BayesPeak cannot deal with RangedData input
BayesPeak bug
7.7 years ago balwierz ▴ 40
1
vote
6
replies
4.1k
views
Gviz issue: crashing when AnnotationTrack( ... , just.group="above")
software error bug crash Gviz
updated 7.7 years ago by ★ 1.6k • written 7.8 years ago by ▴ 160
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide by Gordon Smyth 50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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