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bugs
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0
votes
11
replies
1.5k
views
limma::contrast.fit() potential bugs when weights from voom() included
bugs
limma
19 months ago
Zhenyu
• 0
0
votes
2
replies
1.6k
views
AffyBatch and ArrayExpress
arrayexpress
affy
bugs
updated 6.1 years ago by
James W. MacDonald
65k • written 6.1 years ago by
Ed Siefker
▴ 230
5
votes
16
replies
2.2k
views
GSVA package scores are opposite on mac and windows
GSVA
bug
gsva
bugs
updated 6.5 years ago by
Robert Castelo
★ 3.2k • written 6.5 years ago by
JasonL_Weirather
▴ 10
0
votes
1
reply
1.1k
views
bug in dba.overlap (dba.plotVenn)
DiffBind
bugs
updated 6.9 years ago by
Rory Stark
★ 5.1k • written 6.9 years ago by
jeremydt
• 0
2
votes
3
replies
1.4k
views
A bug of "seqlevels<-" on TxDb
txdb.hsapiens.ucsc.hg19.knowngene
seqlevels
bugs
updated 7.4 years ago by
Hervé Pagès
16k • written 7.4 years ago by
wcstcyx
▴ 30
5
votes
2
replies
1.2k
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub
bugs
encode
bed
7.4 years ago
wcstcyx
▴ 30
0
votes
0
replies
1.1k
views
Bugs for impute package
bugs
impute
7.6 years ago
Shicheng Guo
• 0
0
votes
4
replies
1.6k
views
DESeq2 contrast cleaning problem
software error
bugs
deseq2
updated 8.2 years ago by
Michael Love
41k • written 8.2 years ago by
john.hu
• 0
0
votes
0
replies
1.4k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
8.4 years ago
wanghao1993333
• 0
0
votes
2
replies
1.6k
views
x-axis ticks are misaligned in ggbio tracks
ggbio
bugs
tracks
autoplot
9.2 years ago
cooketho
• 0
4
votes
3
replies
1.5k
views
arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics
bugs
error
updated 9.4 years ago by
James W. MacDonald
65k • written 9.4 years ago by
daugherty_a
• 0
0
votes
4
replies
2.0k
views
DESeq2 more differentially expressed genes
Bugs
deseq2
updated 9.6 years ago by
Michael Love
41k • written 9.6 years ago by
lmf.bill@gmail.com
▴ 10
0
votes
0
replies
1.4k
views
ggbio() + geom_alignment has stopped working
Bugs
ggbio
9.6 years ago
Anne Deslattes Mays
▴ 30
13 results • Page
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Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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