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Building a reduced BSgenome.Gallus.UCSC.galGal 4 from Bioconductor
r
build
genome
chicken-sheme
8.5 years ago
pertille
• 0
1
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3
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1.5k
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How to access error log from build report
build
testthat
cmd check
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
Peter
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4
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2
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643
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A way to find which genome builds a package supports
build
genome
13 months ago
Dmitry
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708
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Error in the Multiple platform build/check report for BioC 3.15
build
BuildReport
updated 2.3 years ago by
Mike Smith
★ 6.5k • written 2.3 years ago by
Meriem
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1
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1
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451
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Mac/Windows test build systems?
build
updated 2.5 years ago by
shepherl
3.8k • written 2.5 years ago by
hstern2
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0
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News:
Release Deadline: Passing R CMD build and R CMD check
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6.1 years ago
shepherl
3.8k
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Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp
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clacarion
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I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
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Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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