Bioconductor CBioPortalData

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cBioPortalData

updated 5 months ago by Marcel Ramos 700 • written 5 months ago by Astrid Deschênes • 0

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cBioPortalData

11 months ago karam • 0

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cBioPortalData

updated 14 months ago by Ndimensional ▴ 20 • written 3.4 years ago by andreas.wernitznig • 0

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RaggedExperiment cBioPortalData

updated 2.0 years ago by Marcel Ramos 700 • written 2.1 years ago by ryan.hagenson • 0

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cBioPortalData

2.1 years ago • updated 2.0 years ago ryan.hagenson • 0

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MultiAssayExperiment cBioPortalData

updated 3.4 years ago by Kevin Blighe ★ 4.0k • written 3.4 years ago by Javier • 0

6 results • Page 1 of 1

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Answer: Dealing with 0 miRNA counts in DESeq2 analysis and influence in adjusted p-value by Michael Love 42k

This is covered in the workflow (rnaseqGene). You can filter them, but no they will not negatively affect the multiple testing because o…

Comment: When doing differential methylation using the sesame package, seems to only go by ramiro.barrantes ▴ 10

Thank you, the strange thing is that I am only getting positive effect sizes. I [see two relevant definitions][1]: - Eff_* : The effect s…

Comment: When doing differential methylation using the sesame package, seems to only go by James W. MacDonald 67k

The odds ratio, not log FC. My bad.

Comment: When doing differential methylation using the sesame package, seems to only go by James W. MacDonald 67k

``` testResult$Eff_Condition > 0.1 ```

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Fatima • 0

I identified 3804 genes with GO annotations. I put my liste of genes in this link [enter link description here][1] universe <- mapIds…

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Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus

Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th

Answer: object 'hdac_targets' not found

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Popular Question to rae.alshammari ▴ 10

Popular Question to Mthabisi Moyo ▴ 40