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cager
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Spam:
Can I cancel my British Airways flight and get a refund?
CAGEr
gep2pep
hcg110.db
11 months ago
Haggu
10
6
votes
8
replies
2.1k
views
CAGEr bug report: wrong consensus cluster results
CAGEr
updated 2.6 years ago by
Charles Plessy
▴ 180 • written 3.3 years ago by
Meng
▴ 30
0
votes
3
replies
1.6k
views
CAGEr: Problem when running getCTSS
CAGEr
updated 4.3 years ago by
Charles Plessy
▴ 180 • written 4.5 years ago by
Sergio
• 0
1
vote
2
replies
1.3k
views
CAGEexp vs CAGErseq
CAGEr
updated 4.4 years ago by
Charles Plessy
▴ 180 • written 4.9 years ago by
MatteoP
▴ 10
0
votes
0
replies
775
views
CAGEr consensusClustersDESeq2()
CAGEr
4.9 years ago
MatteoP
▴ 10
0
votes
5
replies
1.7k
views
CAGEr promoter width graph
CAGEr
updated 4.5 years ago by
Charles
• 0 • written 5.5 years ago by
leehami7407
• 0
1
vote
4
replies
1.4k
views
CAGEr quantilePositions() takes forever to run
CAGEr
quantilePositions
5.8 years ago
mirkocelii
▴ 40
1
vote
6
replies
2.0k
views
Behaviour of getCTSS on a CAGEset - extra reads?
cager
cage
ctss
updated 5.8 years ago by
Charles Plessy
▴ 180 • written 6.7 years ago by
sarac
▴ 20
1
vote
3
replies
1.4k
views
CAGEr: Quantile Values (q_0.1 and q_0.9) in CAGEset / CAGEexp objects
CAGEr
CAGEset
quantile
CAGEexp
5.8 years ago
mirkocelii
▴ 40
4
votes
6
replies
1.9k
views
CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width(x) cannot contain negative integers
CAGEr
IRanges
aggregateTagClusters
5.8 years ago
mirkocelii
▴ 40
2
votes
5
replies
2.0k
views
Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of the clustered tags into the resultant cluster?
CTSS clustering
tag per million
tag counts
CAGEr
updated 4.3 years ago by
Charles Plessy
▴ 180 • written 6.8 years ago by
regcastillo1990
• 0
0
votes
0
replies
1.5k
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
7.3 years ago
bharata1803
▴ 60
0
votes
1
reply
1.3k
views
a problem from import CTSStable in CAGEr
cager
CAGEr
7.3 years ago
Zhong JW
• 0
1
vote
2
replies
1.8k
views
error: getCTSS from CAGEexp class with removeFirstG=TRUE
cager
7.4 years ago
Pengcheng Yang
▴ 60
9
votes
18
replies
3.5k
views
bam2CTSS function error from CAGEr package
cager
7.4 years ago
Pengcheng Yang
▴ 60
4
votes
5
replies
1.8k
views
no import.bam function in CAGEr version 1.22.3
cager
7.4 years ago
Pengcheng Yang
▴ 60
1
vote
1
reply
1.3k
views
CAGEr: consensusCluster doesn't have dominant CTSS info
cager
7.8 years ago
Jingwen
▴ 10
0
votes
1
reply
1.5k
views
CAGEr - How to change plot axis range in CAGEr
BRAIN
CAGEr
BRAIN
CAGEr
updated 7.8 years ago by
Charles Plessy
▴ 180 • written 11.6 years ago by
Tobias Hohenauer
▴ 10
1
vote
1
reply
1.5k
views
clusterCTSS() error when running CAGEr
CAGEr
updated 8.4 years ago by
Charles Plessy
▴ 180 • written 8.4 years ago by
bo_yan
▴ 10
2
votes
8
replies
2.9k
views
CAGEr BAM files size issue
CAGEr
BAM
software error
R
biostrings
updated 8.6 years ago by
Charles Plessy
▴ 180 • written 8.7 years ago by
orzechowska.mag
▴ 10
4
votes
5
replies
2.8k
views
CAGEr : problem while filtering the bamFile
CAGEr
cage
updated 4.5 years ago by
jingxian.18
• 0 • written 10.1 years ago by
Vivek.b
▴ 100
0
votes
1
reply
1.5k
views
Scale Y-axis in "plotInterquantileWidth" function for an easier comparison between conditions
CAGEr
updated 11.1 years ago by
James W. MacDonald
68k • written 11.1 years ago by
calibula2000
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: GSEA error
by
Adithi
• 0
Thank you so much. That makes perfect sense to me. I will work on this.
Comment: tximeta cannot open annotation gtf?
by
Michael Love
43k
Yes, so this is the same type of error you would get if you tried to assemble a *SummarizedExperiment* manually with tximport + GTF process…
Answer: tximeta cannot open annotation gtf?
by
ATpoint
★ 5.0k
> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…
Answer: GSEA error
by
James W. MacDonald
68k
At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…
Comment: Unable to find ENTREZ IDs
by
Adithi
• 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Votes
Answer: GSEA error
Answer: OrgDb for maize
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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