Bioconductor Cager

Showing : cager • reset

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2.9k

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cager

6.4 years ago Pengcheng Yang ▴ 60

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1.7k

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CAGEr

updated 20 months ago by Charles Plessy ▴ 180 • written 2.3 years ago by Meng ▴ 30

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2.4k

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CAGEr cage

updated 3.5 years ago by jingxian.18 • 0 • written 9.1 years ago by Vivek.b ▴ 100

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1.5k

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cager

6.4 years ago Pengcheng Yang ▴ 60

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1.6k

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CAGEr IRanges aggregateTagClusters

4.9 years ago mirkocelii ▴ 40

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2.4k

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CAGEr BAM software error R biostrings

updated 7.6 years ago by Charles Plessy ▴ 180 • written 7.7 years ago by orzechowska.mag ▴ 10

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1.6k

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CTSS clustering tag per million tag counts CAGEr

updated 3.3 years ago by Charles Plessy ▴ 180 • written 5.8 years ago by regcastillo1990 • 0

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1.6k

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cager

6.4 years ago Pengcheng Yang ▴ 60

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1.1k

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CAGEr quantilePositions

4.8 years ago mirkocelii ▴ 40

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1.1k

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CAGEr

updated 3.4 years ago by Charles Plessy ▴ 180 • written 3.9 years ago by MatteoP ▴ 10

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1.2k

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CAGEr

updated 7.4 years ago by Charles Plessy ▴ 180 • written 7.4 years ago by bo_yan ▴ 10

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1.1k

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cager

6.8 years ago Jingwen ▴ 10

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1.1k

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CAGEr CAGEset quantile CAGEexp

4.9 years ago mirkocelii ▴ 40

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1.6k

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cager cage ctss

updated 4.8 years ago by Charles Plessy ▴ 180 • written 5.7 years ago by sarac ▴ 20

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1.2k

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TSS promoter cage cager

6.3 years ago bharata1803 ▴ 60

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1.3k

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BRAIN CAGEr BRAIN CAGEr

updated 6.9 years ago by Charles Plessy ▴ 180 • written 10.6 years ago by Tobias Hohenauer ▴ 10

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1.2k

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CAGEr

updated 10.1 years ago by James W. MacDonald 68k • written 10.1 years ago by calibula2000 • 0

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1.1k

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cager CAGEr

6.4 years ago Zhong JW • 0

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1.4k

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CAGEr

updated 3.5 years ago by Charles • 0 • written 4.5 years ago by leehami7407 • 0

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610

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CAGEr

3.9 years ago MatteoP ▴ 10

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1.3k

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CAGEr

updated 3.4 years ago by Charles Plessy ▴ 180 • written 3.5 years ago by Sergio • 0

21 results • Page 1 of 1

Recent ...

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Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…

Comment: GAGE kegg.gsets() self-signed certificate error by Lucas • 0

Hello, I ended up solving the issue by using the first strategy: Disable the SSL certificate Verification. I used the following code to …

Comment: Clarification on GOALL / GO2ALLORFs mapping by DavideSant • 0

Thank you for your answer James. I have to disagree though, at the SGD webpage you posted there is no indication that "GO:0045719 - negati…

Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana by Michael Love 43k

And to add to this: when you put a generic package (e.g. DESeq2) as a tag, it actually emails the maintainer.

Answer: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

TPM is fine, I've also sometimes used TPM with some robust column scaling, e.g.: ``` sf <- DESeq2::estimateSizeFactorsForMatrix(txi$abu…

Votes

Answer: Using TPM from tximport of Salmon output for singscore

Comment: Using TPM from tximport of Salmon output for singscore

Answer: affy::rma results doesn't match with ncbi website

Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with multiple cell types

Answer: Replicates in DESeq2

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