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Comment: TPM normalization starting with read counts
by
JAcky
•
0
@gordonsmyth So you think my method in TPM normalization that I introduced above is not good?
Is there any way you suggest to improve the …
Comment: pathview says my nonmodel species is unknown: "species invalid"
by
nute11a
•
0
Photinus pyralis https://www.genome.jp/kegg-bin/show_organism?org=ppyr
Answer: Filter Mutations?
by
Marcel Ramos
570
Hi Ryan,
We use the `RaggedExperiment` class because it allows you to do much more than what a simple `data.frame` can do.
Have a look …
Comment: rtracklayer import only subset of ranges
by
shepherl
3.2k
Looks like it might be exclusion of the start but inclusive of stop:
```
> which <- GRanges(c("chr10"), IRanges(start=180185, end=180185)…
Comment: Unable to download supplementary files from GSE146963 using GEOquery
by
shepherl
3.2k
I'm not able to reproduce this. Are you sure you have permissions on where you are downloading/writing?
```
> getGEOSuppFiles("GSE146963"…
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