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limma camera cameraPR edgeR gene set testing

updated 5.2 years ago by Gordon Smyth 48k • written 5.2 years ago by jamie.gearing ▴ 60

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Comment: It's possible to use clusterProfiler without an annotationDBI package by nromerov • 0

Thank you very much for your help iu was really deseperate about this that i wasn't thinking too well yesterday im really gratefull with yo…

Comment: Ensembl down??? by bas_work ▴ 20

I want to link 'external_gene_names' (mouse, multiple lists) with the ensembl gene IDs and HGNC symbols of human orthologues using getLDS()…

Answer: SingleR Book Not Found by Peter Hickey ▴ 650

It's not gone, but it also hasn't successfully built since the most recent Bioconductor release ([https://bioconductor.org/checkResults/rel…

Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default by James W. MacDonald 64k

The arguments for that function can be found in the help page (accessed using `?DESeqDataSetFromTximport`) ``` Usage: DESeqDataSet(s…

Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default by Michael Love 41k

argument txi is missing, with no default This means the function was expecting a named argument txi Check the man page for the funct…

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Answer: gseGO input list

Comment: Problem loading HDF5Array in R 4.3.2

Comment: Ensembl down???

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