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cancer
•
reset
0
votes
1
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11k
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heatmap.2 - change column & row locations; angle / rotate
Cancer
Cancer
written 10.4 years ago by
Cheng, Yong-Sheng
▴ 10
0
votes
1
reply
510
views
BioC packages in cancer genomics
genomics
cancer
updated 12 months ago by
Kevin Blighe
★ 3.9k • written 13 months ago by
Bogdan
▴ 670
0
votes
0
replies
529
views
Job:
Postdoctoral Fellow – Computational Biology (Genetic Interactions in Cancer)
geneticinteractions
cancer
networks
machine_learning
13 months ago
Colm
• 0
0
votes
0
replies
667
views
Job:
PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer
bioinformatics
proteomics
genomics
phd
16 months ago
DKFZ International PhD Program
▴ 10
1
vote
0
replies
704
views
Job:
Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics
Proteomics
Cancer
Statistics
Bioinformatics
20 months ago
Andy Lynch
▴ 120
0
votes
0
replies
701
views
Calculating tumour purity having only CNA data
PureCN
CNA
purity
cancer
21 months ago
JAcky
• 0
0
votes
0
replies
698
views
Job:
Postdoc position - Genetic epi/statistical genetics
GWAS
cancer
biomarkers
PRS
21 months ago
Sarah
• 0
0
votes
1
reply
1.2k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI
Cancer
GUI
Cancer
written 20.1 years ago by
A.J. Rossini
▴ 810
1
vote
0
replies
705
views
Job:
PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd
cancer
genomics
proteomics
bioinformatics
23 months ago
DKFZ International PhD Program
▴ 10
0
votes
1
reply
676
views
WGCNA
Cancer
updated 2.4 years ago by
Basti
▴ 750 • written 2.4 years ago by
aikaterinilama
• 0
0
votes
0
replies
812
views
Job:
Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia
cancer
wehi
2.9 years ago • updated 2.6 years ago
Gordon Smyth
50k
0
votes
0
replies
815
views
Job:
Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer
postdoc
biomarkers
Biobase
3.0 years ago
Daniel Brewer
▴ 100
0
votes
0
replies
871
views
Job:
Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase
bioinformatics
biomarkers
cancer
3.3 years ago
Daniel Brewer
▴ 100
0
votes
0
replies
912
views
Job:
Postdoctoral Data Scientist @ Oxford University, UK
Cancer
CancerSubtypes
postdoc
3.4 years ago
Daniel Brewer
▴ 100
2
votes
13
replies
1.3k
views
Sample size imbalance in a multi-regional experiment
deseq2
cancer
updated 3.5 years ago by
Michael Love
41k • written 3.5 years ago by
bioconductor_user_1675
• 0
4
votes
7
replies
1.4k
views
Limma sample groups
microarray
limma
affy
cancer
updated 3.5 years ago by
Gordon Smyth
50k • written 3.5 years ago by
nancy.nassar1590
• 0
0
votes
5
replies
1.9k
views
TCGA: to extract clinical data from barcode
cancer
TCGAbiolinks
updated 3.5 years ago by
Kevin Blighe
★ 3.9k • written 3.5 years ago by
Marie DENIS
▴ 10
1
vote
6
replies
2.0k
views
TCGA: clinical data and expression data
microarray
annotation
cancer
updated 13 months ago by
Sharif
• 0 • written 3.5 years ago by
641549298
• 0
0
votes
5
replies
1.9k
views
Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2
cancer
updated 3.6 years ago by
Michael Love
41k • written 3.6 years ago by
rezashiralmohammad
• 0
0
votes
0
replies
781
views
Job:
Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer
nextgenerationsequencing
prostate
Job
4.1 years ago • updated 3.8 years ago
Daniel Brewer
▴ 100
4
votes
10
replies
2.4k
views
how to analyze WGCNA results?
cancer
probe
deseq2
annotation
normalization
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
rajpal22288
▴ 10
1
vote
2
replies
3.7k
views
Partial NA coefficients for 10 probe(s) Limma
limma
microarray
cancer
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
everardoremi
• 0
0
votes
3
replies
1.2k
views
Topgo, Deseq and KEGG pathway
annotation
cancer
updated 4.0 years ago by
shepherl
3.8k • written 4.0 years ago by
Nas 1989
• 0
0
votes
1
reply
938
views
WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 4.0 years ago by
Peter Langfelder
★ 2.9k • written 4.0 years ago by
sagigordon
• 0
0
votes
0
replies
946
views
Job:
Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer
computational biology
bioinformatics
epigenetics
Job
4.1 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
826
views
Job:
Data Sciences Statistician - Dana-Farber Cancer Institute
job
data science
biostatistics
bioinformatics
cancer
Job
4.1 years ago
Patrick Kimes
▴ 10
0
votes
0
replies
911
views
Job:
postdoc position in computational cancer biology in Milan, Italy
cancer
networks
genomics
epigenomics
Job
4.4 years ago • updated 4.2 years ago
marschaefer
• 0
0
votes
0
replies
647
views
Methylmix results are a bit different from beta values results
cancer
methylmix
methylation
betavalues
DMvalues
4.2 years ago
luciomora8
• 0
0
votes
0
replies
813
views
Job:
Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer
biomarkers
bioinformatician
Job
4.3 years ago
Daniel Brewer
▴ 100
2
votes
3
replies
1.1k
views
DESeq2: DE Analysis with very imbalanced samples per condition
deseq2
cancer
updated 10 weeks ago by
Shaimaa Gamal
• 0 • written 4.4 years ago by
thanos5541
• 0
0
votes
0
replies
542
views
miRNA and drugs
cancer
4.4 years ago
maria.k.pagoni
• 0
1
vote
0
replies
990
views
Job:
PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer
genomics
deep learning
computational biology
Job
4.5 years ago • updated 4.4 years ago
Shamith.Samarajiwa
▴ 180
1
vote
0
replies
954
views
Job:
Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning
cancer
immunotherapy
computational biology
Job
4.5 years ago • updated 4.4 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
843
views
Job:
Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer
Job
4.5 years ago
Johannes Rainer
★ 2.0k
1
vote
4
replies
1.2k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer
Isoform
limma
IsoformSwitchAnalyzeR
updated 4.5 years ago by
k.vitting.seerup
▴ 120 • written 4.5 years ago by
asmita
• 0
2
votes
1
reply
2.3k
views
How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer
limma
deseq2
updated 4.5 years ago by
svlachavas
▴ 830 • written 4.5 years ago by
KCLiv
▴ 20
0
votes
0
replies
732
views
Job:
Bioinformatician @ University of Cambridge
cancer
bioinformatics
R
Job
4.5 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
870
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
4.5 years ago
sheneicechang
• 0
0
votes
0
replies
663
views
News:
Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer
meetup
News
4.5 years ago
Ning Leng
• 0
0
votes
5
replies
1.8k
views
RNA-seq time course analysis with only one experimental condition
deseq2
cancer
rna-seq
time-series
4.7 years ago
mah19
• 0
0
votes
0
replies
784
views
MatchGenes in Bumphunter - result list with multiple genes
cancer
4.7 years ago
hanna_engqvist
• 0
1
vote
0
replies
1.5k
views
Job:
Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer
deep learning
genomics
Job
4.9 years ago • updated 4.8 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
817
views
Job:
Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell
genome
cancer
Job
4.8 years ago
jmaanaki
• 0
0
votes
2
replies
861
views
Chromosomal location mapping for miRNAs
cancer
updated 4.8 years ago by
James W. MacDonald
65k • written 4.8 years ago by
angajalaanusha
▴ 10
0
votes
3
replies
939
views
Is Background Correction necessary before DESeq analysis
deseq2
cancer
updated 4.9 years ago by
Michael Love
41k • written 4.9 years ago by
vivekr
• 0
1
vote
4
replies
925
views
DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2
cancer
updated 4.9 years ago by
Michael Love
41k • written 4.9 years ago by
xuyao15927402897
• 0
4
votes
1
reply
8.3k
views
WGCNA-unable to install GO.db package
go
cancer
updated 4.9 years ago by
Martin Morgan
25k • written 4.9 years ago by
852108577
▴ 20
0
votes
1
reply
714
views
Help installing netReg
netReg
cancer
5.0 years ago
sbrackett007
• 0
2
votes
4
replies
1.2k
views
SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC
probe
normalization
GEOdata
cancer
5.0 years ago
s.goncalvesclaro
▴ 10
0
votes
0
replies
821
views
Job:
Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R
Python
Computational-Biology
Cancer
Job
5.0 years ago
Shamith.Samarajiwa
▴ 180
50 results • Page
1 of 1
Recent ...
Replies
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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