Showing : cancer • reset
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heatmap.2 - change column & row locations; angle / rotate
Cancer Cancer
written 10.4 years ago by ▴ 10
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1
reply
523
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BioC packages in cancer genomics
genomics cancer
updated 13 months ago by ★ 3.9k • written 13 months ago by ▴ 670
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555
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Job: Postdoctoral Fellow – Computational Biology (Genetic Interactions in Cancer)
geneticinteractions cancer networks machine_learning
13 months ago Colm • 0
0
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0
replies
686
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer bioinformatics proteomics genomics phd
17 months ago DKFZ International PhD Program ▴ 10
1
vote
0
replies
730
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
20 months ago Andy Lynch ▴ 120
0
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0
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719
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Calculating tumour purity having only CNA data
PureCN CNA purity cancer
21 months ago JAcky • 0
0
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0
replies
720
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
22 months ago Sarah • 0
0
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1
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1.2k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 20.1 years ago by ▴ 810
1
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0
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720
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
24 months ago DKFZ International PhD Program ▴ 10
0
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1
reply
698
views
WGCNA
Cancer
updated 2.4 years ago by ▴ 760 • written 2.4 years ago by • 0
0
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0
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822
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Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia cancer wehi
3.0 years ago • updated 2.6 years ago Gordon Smyth 50k
0
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0
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832
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Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
3.1 years ago Daniel Brewer ▴ 100
0
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0
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888
views
Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
3.3 years ago Daniel Brewer ▴ 100
0
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0
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928
views
Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
3.5 years ago Daniel Brewer ▴ 100
2
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13
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1.3k
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Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 3.5 years ago by 41k • written 3.5 years ago by • 0
4
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7
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1.5k
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Limma sample groups
microarray limma affy cancer
updated 3.5 years ago by 50k • written 3.5 years ago by • 0
0
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5
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2.0k
views
TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 3.6 years ago by ★ 3.9k • written 3.6 years ago by ▴ 10
1
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6
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2.1k
views
TCGA: clinical data and expression data
microarray annotation cancer
updated 14 months ago by • 0 • written 3.6 years ago by • 0
0
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5
replies
1.9k
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Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 3.6 years ago by 41k • written 3.6 years ago by • 0
0
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0
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800
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Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
4.2 years ago • updated 3.8 years ago Daniel Brewer ▴ 100
4
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10
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2.5k
views
how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by ▴ 10
1
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2
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3.7k
views
Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
0
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3
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1.3k
views
Topgo, Deseq and KEGG pathway
annotation cancer
updated 4.0 years ago by 3.8k • written 4.0 years ago by • 0
0
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1
reply
978
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WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 4.1 years ago by ★ 3.0k • written 4.1 years ago by • 0
0
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0
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965
views
Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
4.2 years ago • updated 4.1 years ago Shamith.Samarajiwa ▴ 180
0
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0
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852
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
4.1 years ago Patrick Kimes ▴ 10
0
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0
replies
928
views
Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
4.4 years ago • updated 4.3 years ago marschaefer • 0
0
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0
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661
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Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
4.3 years ago luciomora8 • 0
0
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0
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824
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Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
4.4 years ago Daniel Brewer ▴ 100
2
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3
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1.1k
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DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 3 months ago by • 0 • written 4.4 years ago by • 0
0
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0
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553
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miRNA and drugs
cancer
4.4 years ago maria.k.pagoni • 0
1
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0
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1.0k
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Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
4.5 years ago Shamith.Samarajiwa ▴ 180
1
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0
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972
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Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
4.6 years ago • updated 4.5 years ago Shamith.Samarajiwa ▴ 180
0
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0
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852
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Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
4.5 years ago Johannes Rainer ★ 2.0k
1
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4
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1.2k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 4.5 years ago by ▴ 120 • written 4.5 years ago by • 0
2
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1
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2.3k
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How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 4.5 years ago by ▴ 830 • written 4.5 years ago by ▴ 20
0
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0
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749
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Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
4.5 years ago Shamith.Samarajiwa ▴ 180
0
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0
replies
897
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
4.6 years ago sheneicechang • 0
0
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0
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676
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News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
4.6 years ago Ning Leng • 0
0
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5
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1.8k
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
4.8 years ago mah19 • 0
0
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0
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796
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MatchGenes in Bumphunter - result list with multiple genes
cancer
4.8 years ago hanna_engqvist • 0
1
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0
replies
1.5k
views
Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
5.0 years ago • updated 4.9 years ago Shamith.Samarajiwa ▴ 180
0
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0
replies
832
views
Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
4.9 years ago jmaanaki • 0
0
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2
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874
views
Chromosomal location mapping for miRNAs
cancer
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 10
0
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3
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951
views
Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 4.9 years ago by 41k • written 4.9 years ago by • 0
1
vote
4
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953
views
DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 4.9 years ago by 41k • written 4.9 years ago by • 0
4
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1
reply
8.5k
views
WGCNA-unable to install GO.db package
go cancer
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 20
0
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1
reply
731
views
Help installing netReg
netReg cancer
5.0 years ago sbrackett007 • 0
2
votes
4
replies
1.2k
views
SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
5.0 years ago s.goncalvesclaro ▴ 10
0
votes
0
replies
838
views
Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.0 years ago Shamith.Samarajiwa ▴ 180
50 results • Page 1 of 1
Recent ...
Replies
Comment: DEG with low counts by Rajat • 0
Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…
Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k
To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…
Answer: flowStats Search Error by shepherl 3.8k
We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.
Comment: How to correct for known and surrogate variables in DESeq2? by nhaus ▴ 30
Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…
Votes
Answer: Light difference when using coef vs omit a group when compare 3 groups.
C: Add new columns to DESeqResults from text file by matching rownames.
Answer: geneList error in clusterprofiler
Comment: Memory errors using read.bismark?
Comment: Not fully paired differential gene expression analysis
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