Bioconductor Cancerinsilico

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GEOquery CancerData limma RCy3 CancerInSilico

updated 2.9 years ago by Steve Lianoglou ★ 13k • written 2.9 years ago by Caitlin ▴ 50

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Comment: Bioconductor Digest, Vol 68, Issue 7 by parikapain1353 • 0

Hi [melon sandbox][1], is there any new update to this file? [1]: https://melon-sandbox.com

Comment: AnnotationHub not working by 01icy9ird1e • 0

Hey @[geometry dash wave][1], where is the output, please? [1]: https://geometrydashwave.com

Answer: Which input data is acceptable for MAST? by Andrew_McDavid ▴ 270

Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…

Answer: segfault when using singleR with Azimuth reference by James W. MacDonald 67k

The training step is usually faster than the classification step, so you might try running `trainSingleR` on the reference to see if that i…

Comment: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi by James W. MacDonald 67k

You don't. I believe Fisher has a quote that applies here. Also, please don't add to five year old posts. Start a new one.

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Comment: Normalization RNA-seq for multiple plates

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Popular Question to Andrew_McDavid ▴ 270

Scholar to Ryan C. Thompson ★ 7.9k