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Two-way interaction, linear redundancy
limma
caret
lm
lmer
lme4
updated 4.7 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
Sindre
▴ 110
1
vote
1
reply
1.7k
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Cannot specify probability function for extraTrees model in caret package
caret
extraTrees
machinelearning
8.8 years ago
liuy12
• 0
1
vote
2
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1.5k
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Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification
machinelearning
microarray
multivariate
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updated 8.4 years ago by
Steve Lianoglou
★ 13k • written 8.4 years ago by
svlachavas
▴ 830
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0
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1.3k
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brnn package (Bayesian regularization for feed-forward neural networks)
R
machine learning
brnn
caret
5.8 years ago
elisa.micarelli
▴ 10
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
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Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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