Showing : category • reset
2
votes
2
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1.1k
views
rownames for categoryReshape
Category
updated 9.4 years ago by 25k • written 9.4 years ago by • 0
1
vote
0
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1.3k
views
enrichment analysis for gene pairs
go gostats category gsea
8.5 years ago Hector Corrada Bravo ▴ 60
1
vote
0
replies
2.1k
views
TopGO p-values VS DAVID p-values
Microarray GO Category topGO Microarray GO Category topGO
12.2 years ago Paul Geeleher ★ 1.3k
1
vote
0
replies
1.2k
views
how to fetch GO categories from Chinese hamster genome
GO Category goseq
9.6 years ago upendra kumar devisetty ▴ 30
1
vote
1
reply
1.2k
views
Goseq output with too many GO terms per category
go goseq goterm category
updated 5.7 years ago by 50k • written 5.7 years ago by • 0
1
vote
0
replies
877
views
RmiR, request for new package
miRNA Annotation GO cdf probe PROcess Category miRNA Annotation GO cdf probe PROcess
15.1 years ago Nishant Gopalakrishnan ▴ 340
0
votes
4
replies
1.6k
views
R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Breast Prostate probe Category xps Annotation Normalization xps
updated 12.6 years ago by ★ 3.9k • written 12.6 years ago by ▴ 80
0
votes
1
reply
932
views
warnings or potential problems in limma procedure
limma Category limma Category
13.0 years ago Yi, Ming NIH/NCI [C] ▴ 100
0
votes
9
replies
1.8k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ★ 2.2k
0
votes
0
replies
732
views
Expression Array databases...
Category Category
21.5 years ago Anthony Rossini ▴ 530
0
votes
0
replies
1.3k
views
InfoVis 2003 Call for Papers
Visualization PROcess Category Visualization PROcess Category
21.2 years ago rgentleman ★ 5.5k
0
votes
0
replies
614
views
RMA question (weighted averages)
Category Category
20.7 years ago Chris Paulse ▴ 90
0
votes
1
reply
1.1k
views
Annotating yeast ORFs with GO and KEGG
GO Yeast annotate Category GO Yeast annotate Category
updated 20.4 years ago by ▴ 70 • written 20.4 years ago by ▴ 80
0
votes
0
replies
637
views
display spots of multiple control status (maControls)
Category Category
20.4 years ago Foata,Francis,LAUSANNE,NRC/N&H ▴ 40
0
votes
2
replies
1.2k
views
Difficulties in using the mgsa package for Gene Set Analysis
GO rat2302 Category mgsa GO rat2302 Category mgsa
updated 11.3 years ago by ▴ 60 • written 11.3 years ago by ★ 13k
0
votes
0
replies
760
views
GOstats gene set size selection
Microarray GO GOstats Category Microarray GO GOstats Category
16.0 years ago alex lam RI ▴ 30
0
votes
1
reply
1.0k
views
KNN, SVM, and randomForest - How to predict samples without category
Category Category
updated 19.7 years ago by ▴ 60 • written 19.7 years ago by ▴ 120
0
votes
0
replies
1.1k
views
loading SMD...
Cancer Breast Organism probe Category Cancer Breast Organism probe Category
19.9 years ago Mayte Suarez-Farinas ▴ 300
0
votes
2
replies
1.3k
views
KNN, SVM, and randomForest - How to predict test without known categories
Category Category
updated 19.7 years ago by ★ 1.8k • written 19.7 years ago by ▴ 120
0
votes
0
replies
1.2k
views
KNN, SVM, and randomForest - How to predict test without known categories (affy data)
Microarray Category Microarray Category
19.7 years ago Liu, Xin ▴ 120
0
votes
1
reply
1.6k
views
KNN, SVM, and randomForest - How to predict testing set without known categories (affy data)
Microarray Clustering Category Microarray Clustering Category
updated 19.7 years ago by ★ 1.8k • written 19.7 years ago by ▴ 120
0
votes
0
replies
1.2k
views
Re: KNN, SVM, and randomForest - How to predict testing set without known categories (affy data)
Microarray Clustering Category Microarray Clustering Category
19.7 years ago Kasper Daniel Hansen ▴ 630
0
votes
1
reply
726
views
GoHyperG question
GO GOstats Category GO GOstats Category
updated 19.7 years ago by ★ 2.9k • written 19.7 years ago by ▴ 10
0
votes
1
reply
804
views
how to exrtact col. names from exprs()
GO Category GO Category
updated 19.7 years ago by ★ 1.8k • written 19.7 years ago by ▴ 320
0
votes
1
reply
950
views
Affy mas5calls on Hu6800 arrays
Cancer hu6800 probe affy Category Cancer hu6800 probe affy Category
19.4 years ago Stronach, Euan A ▴ 20
0
votes
4
replies
1.4k
views
Anyone have a GO slim list for Affy HG-U133A or HG-U133Av2?
Annotation GO annotate affy PROcess Category cycle Annotation GO annotate affy PROcess
updated 19.1 years ago by ▴ 310 • written 19.2 years ago by ▴ 250
0
votes
3
replies
953
views
Trouble using GOstats
GO hgu133a Category GO hgu133a Category
updated 19.1 years ago by ★ 5.5k • written 19.1 years ago by ▴ 80
0
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0
replies
651
views
How to start?
Classification Clustering Category Classification Clustering Category
19.0 years ago Malik Yousef ▴ 40
0
votes
6
replies
1.1k
views
where to start?
Classification Clustering Category Classification Clustering Category
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 40
0
votes
1
reply
950
views
Limma and Genepix
limma Category limma Category
updated 18.9 years ago by 50k • written 18.9 years ago by ▴ 40
0
votes
0
replies
1.1k
views
edgeR - coefficients in 3-factor experiment, complex contrasts and decideTestsDGE
Category edgeR Category edgeR
12.5 years ago Emanuel Heitlinger ▴ 30
0
votes
0
replies
1.1k
views
blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
17.9 years ago Pedro López Romero ▴ 360
0
votes
1
reply
803
views
Multtest
probe Category probe Category
updated 18.1 years ago by ★ 1.0k • written 18.1 years ago by ▴ 30
0
votes
0
replies
748
views
Re: MetaData 1.6.0
Annotation GO Organism hgu95av2 mguatlas5k mgug4121a rgug4130a probe Category Annotation
19.9 years ago John Zhang ★ 2.9k
0
votes
1
reply
1.1k
views
GO annotation inconsistency
Annotation GO probe Category Annotation GO probe Category
updated 17.7 years ago by 65k • written 17.7 years ago by ▴ 70
0
votes
0
replies
572
views
How to create a MAList or ExprSet object from a matrix
Normalization Preprocessing probe Category Normalization Preprocessing probe Category
17.7 years ago Jenny Drnevich ★ 2.2k
0
votes
1
reply
714
views
about packages GO, Gostats,...
GO GOstats Category GO GOstats Category
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 70
0
votes
3
replies
2.0k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 350
0
votes
0
replies
1.0k
views
help with RankProd plaase
GO Survival cdf genefilter multtest affy limma RankProd Category affycoretools GO cdf
17.4 years ago Kimpel, Mark W ▴ 890
0
votes
5
replies
1.5k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 890
0
votes
2
replies
1.6k
views
problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 890
0
votes
6
replies
1.6k
views
GOstats and custom annotation problem
Annotation GO annotate genefilter graph AnnBuilder RBGL GOstats Category Annotation GO
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 310
0
votes
1
reply
1.1k
views
Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 17.2 years ago by 65k • written 17.2 years ago by ▴ 300
0
votes
2
replies
1.6k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
17.2 years ago Mark W Kimpel ▴ 830
0
votes
0
replies
551
views
Category/ summery student project
Category Category
17.1 years ago Simon Lin ▴ 270
0
votes
3
replies
1.8k
views
Can't get RCurl...
GO Survival annotate genefilter affy graph limma GOstats biomaRt Category affycoretools
updated 17.0 years ago by 65k • written 17.0 years ago by ★ 2.2k
0
votes
0
replies
1.0k
views
Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray GO graph goTools Category oligo Microarray GO graph goTools Category oligo
17.0 years ago Paquet, Agnes ▴ 500
0
votes
6
replies
1.4k
views
hyperGTest
GO Cancer GOstats Category GO Cancer GOstats Category
updated 17.0 years ago by ★ 6.0k • written 17.0 years ago by ★ 7.4k
0
votes
2
replies
860
views
dye effects stronger than dye-swaps?
Microarray Normalization Category Microarray Normalization Category
updated 17.0 years ago by ★ 6.0k • written 17.0 years ago by ★ 2.2k
0
votes
3
replies
1.3k
views
grep GOID, R problem or my problem?
GO affy Category GO affy Category
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 810
50 results • Page 1 of 1
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Comment: flowStats Search Error by tholmes • 0
Thank you so much!
Comment: what is the sampleFiles by James W. MacDonald 65k
I don't see any sampleFiles argument for any function in that package. Ideally you would at least tell us what function you are using.
Comment: Interaction Terms in DESeq2 - Shrinkage by Michael Love 41k
Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE. Alternatively you can use ashr with a con…
Comment: A ComBat-seq issue: the covariates are confounded by schlumbohm • 0
Dear ATpoint, thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…
Comment: Memory errors using read.bismark? by Peter Hickey ▴ 690
If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay. The final object will be on the order of 250 GB in-me…
Votes
Comment: Not fully paired differential gene expression analysis
Comment: [DiffBind] Obtaining normalization factors
Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var
Comment: Not fully paired differential gene expression analysis
Answer: GSVA error
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