Showing : cdf • reset
0
votes
8
replies
1.8k
views
error message in gcrma
cdf affy gcrma matchprobes plier cdf affy gcrma matchprobes plier
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 520
0
votes
9
replies
1.8k
views
problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 80
0
votes
9
replies
2.6k
views
frma and alternative CDFs
GO cdf frma BRAIN GO cdf frma BRAIN
updated 9.7 years ago by ▴ 830 • written 9.7 years ago by ★ 13k
0
votes
9
replies
1.9k
views
combineAffyBatch problem
cdf cdf
15.4 years ago Rifat A Hamoudi ▴ 50
0
votes
5
replies
1.7k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
10.7 years ago Alan Smith ▴ 150
0
votes
5
replies
1.2k
views
Problem using make.cdf.env
rae230a cdf rae230a cdf
updated 20.9 years ago by 65k • written 20.9 years ago by ▴ 200
0
votes
4
replies
1.3k
views
probe --> probe set mapping in CDF library files
cdf probe altcdfenvs cdf probe altcdfenvs
18.0 years ago michael driscoll ▴ 30
0
votes
7
replies
1.5k
views
Assistance: mouse4302cdf installation
cdf affy cdf affy
updated 17.5 years ago by ▴ 10 • written 17.5 years ago by ▴ 20
0
votes
5
replies
1.6k
views
simpleAffy QC on HT_HG-U133_Plus_PM
cdf affy simpleaffy cdf affy simpleaffy
14.4 years ago Michael Walter ▴ 160
0
votes
4
replies
1.2k
views
Exon Array analysis
cdf affylmGUI cdf affylmGUI
updated 15.0 years ago by ▴ 500 • written 15.1 years ago by ▴ 10
0
votes
4
replies
1.2k
views
gcrma with bpmap file instead of cdf file
cdf gcrma cdf gcrma
17.3 years ago Baoqiang Cao ▴ 30
0
votes
6
replies
1.4k
views
question regarding removing probes/probe sets before normalization
cdf probe cdf probe
13.7 years ago • updated 13.6 years ago Jenny Drnevich ★ 2.0k
0
votes
10
replies
1.9k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 17.4 years ago by ▴ 460 • written 17.4 years ago by ▴ 70
0
votes
7
replies
1.9k
views
ragene10st
Annotation GO Rattus norvegicus ChipName cdf probe affy AnnotationDbi AffyCompatible GO
updated 15.1 years ago by ▴ 630 • written 15.2 years ago by ▴ 370
0
votes
6
replies
1.6k
views
Re: fileBrowser
GUI cdf GUI cdf
updated 22.1 years ago by ▴ 530 • written 22.1 years ago by ★ 2.9k
0
votes
5
replies
1.5k
views
PLIER affinities redux
cdf probe Biobase affy plier cdf probe Biobase affy plier
updated 18.5 years ago by ★ 1.1k • written 18.5 years ago by ▴ 60
0
votes
4
replies
1.0k
views
regarding GCRMA normalization
cdf probe cdf probe
14.2 years ago sneha patil ▴ 220
0
votes
3
replies
1.2k
views
Affy : checkSlotAssignment() Error
cdf convert cdf convert
21.5 years ago Sundaram, Shyam NIH/CIT ▴ 110
0
votes
4
replies
1.6k
views
Getting probes id for particular probeset id
cdf cdf
14.2 years ago marek piatek BI ▴ 90
0
votes
3
replies
1.2k
views
annotating genes using KEGG
hgu133a cdf hgu133a cdf
15.1 years ago dhaarini s ▴ 70
0
votes
7
replies
1.5k
views
Using ReadAffy with custom CDFs on tiling array data
cdf probe affy cdf probe affy
updated 15.7 years ago by ▴ 140 • written 15.8 years ago by ▴ 60
0
votes
9
replies
1.5k
views
analyze HuEx array using HuGene .cdf file
cdf cdf
updated 15.4 years ago by ★ 2.4k • written 15.4 years ago by ★ 1.0k
0
votes
3
replies
990
views
Choosing the transcripts for dataanalysis from GeneChip
GO cdf GO cdf
updated 15.1 years ago by ▴ 250 • written 15.1 years ago by ▴ 130
0
votes
3
replies
936
views
General question about library files
cdf affy cdf affy
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 60
0
votes
6
replies
1.3k
views
xps - creating ROOT scheme fi les
Annotation cdf xps Annotation cdf xps
updated 13.9 years ago by ★ 3.9k • written 13.9 years ago by ▴ 170
0
votes
6
replies
1.4k
views
mas5 update.default problem
hgu95av2 cdf affy affyio hgu95av2 cdf affy affyio
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 190
0
votes
9
replies
1.6k
views
MGU74A and MGU74Av2
mgu74a mgu74av2 cdf affy mgu74a mgu74av2 cdf affy
updated 20.9 years ago by ▴ 10 • written 20.9 years ago by ▴ 80
0
votes
3
replies
1.3k
views
hg_u95av2.cdf
cdf cdf
updated 21.9 years ago by ▴ 640 • written 21.9 years ago by ▴ 10
0
votes
4
replies
1.1k
views
trouble with cdf, .qcdef file
cdf cdf
updated 14.4 years ago by 1.6k • written 14.4 years ago by ▴ 40
0
votes
5
replies
2.1k
views
Affymetrix HT HG-U133+ PM Array Plate annotation data
Annotation cdf probe Annotation cdf probe
updated 14.3 years ago by ★ 7.2k • written 14.4 years ago by ▴ 40
0
votes
5
replies
1.5k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 890
0
votes
4
replies
1.2k
views
metadata for Affymetrix Poplar array
Annotation cdf Annotation cdf
updated 17.2 years ago by ▴ 870 • written 17.2 years ago by ★ 1.4k
0
votes
5
replies
1.9k
views
affyPLM - cant plot chip pseudo image
cdf genefilter affy affydata affyPLM simpleaffy affyio cdf genefilter affy affydata
updated 16.8 years ago by 65k • written 16.8 years ago by ▴ 50
0
votes
5
replies
1.5k
views
Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
17.7 years ago Wu, Xiwei ▴ 350
0
votes
7
replies
1.7k
views
A question
cdf tkWidgets cdf tkWidgets
updated 22.0 years ago by ▴ 150 • written 22.0 years ago by ▴ 20
0
votes
3
replies
1.1k
views
Envir. drosgenome1, GENENAME not defined?
GO drosgenome1 cdf annotate affy GO drosgenome1 cdf annotate affy
updated 18.1 years ago by ▴ 780 • written 18.1 years ago by ▴ 270
0
votes
5
replies
1.8k
views
RMA and justRMA error
Cancer cdf Biobase affy gcrma affyio Cancer cdf Biobase affy gcrma affyio
17.7 years ago Aedin Culhane ▴ 510
0
votes
4
replies
1.1k
views
Quantile normalization without using affyBatch
Normalization cdf gcrma Normalization cdf gcrma
updated 19.0 years ago by ▴ 60 • written 19.0 years ago by ▴ 60
0
votes
4
replies
1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 17.5 years ago by 25k • written 17.5 years ago by ★ 2.2k
0
votes
3
replies
1.4k
views
GWATools use in creating ncdf files
SNP cdf GWASTools SNP cdf GWASTools
updated 10.9 years ago by ▴ 60 • written 10.9 years ago by ▴ 870
0
votes
5
replies
1.6k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.5 years ago by ▴ 20 • written 17.5 years ago by ★ 2.2k
0
votes
3
replies
1.2k
views
Binary CDF and CEL files
SNP cdf SNP cdf
19.4 years ago Christopher, Neil NIH/NCI ▴ 70
0
votes
3
replies
1.4k
views
installing affy environment
mgu74av2 cdf probe affy mgu74av2 cdf probe affy
20.6 years ago Straubhaar, Juerg ▴ 300
0
votes
3
replies
1.1k
views
makepackage of affy's 100K and 500K SNP chip
SNP cdf SNP cdf
updated 18.5 years ago by ▴ 220 • written 18.5 years ago by ▴ 60
0
votes
5
replies
1.5k
views
Installation of ath1121501cdf
cdf probe cdf probe
20.7 years ago Delphine Fleury ▴ 60
0
votes
3
replies
1.3k
views
webbioc chicken
Microarray cdf probe multtest affy webbioc Microarray cdf probe multtest affy webbioc
updated 17.2 years ago by ▴ 870 • written 17.2 years ago by ▴ 20
0
votes
8
replies
1.6k
views
MOE430 A and B
moe430a moe430b cdf affy moe430a moe430b cdf affy
updated 20.1 years ago by ▴ 310 • written 20.1 years ago by ▴ 300
0
votes
4
replies
990
views
altcdfenvs
ath1121501 cdf probe ath1121501 cdf probe
updated 19.5 years ago by ▴ 900 • written 19.5 years ago by ▴ 60
0
votes
8
replies
1.6k
views
questions about altcdfenv
GO yeast2 cdf probe GO yeast2 cdf probe
updated 15.6 years ago by ★ 2.0k • written 15.6 years ago by ▴ 160
1
vote
4
replies
4.7k
views
Affymetrix Human Gene 1.0 ST Array
Infrastructure cdf probe affy Infrastructure cdf probe affy
16.0 years ago Hans-Ulrich Klein ▴ 330
50 results • Page 1 of 1
Recent ...
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Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp by clacarion • 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp by clacarion • 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19 by shepherl 3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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