Showing : cdf • reset
0
votes
19
replies
3.4k
views
Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays
Annotation cdf Annotation cdf
updated 11.9 years ago by 65k • written 11.9 years ago by ▴ 340
0
votes
16
replies
1.8k
views
missing value
cdf affy affyQCReport cdf affy affyQCReport
updated 15.7 years ago by 16k • written 15.7 years ago by ▴ 200
0
votes
13
replies
2.3k
views
arrayQualityMetrics error and question
cdf arrayQualityMetrics cdf arrayQualityMetrics
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ▴ 280
0
votes
12
replies
2.1k
views
Bioconductor - hugene10stv1cdf not available
cdf cdf
14.0 years ago Christoph Knapp ▴ 70
0
votes
12
replies
2.3k
views
justRMA?
cdf probe cdf probe
updated 11.4 years ago by 65k • written 11.4 years ago by ▴ 70
0
votes
12
replies
1.9k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 460
0
votes
10
replies
1.4k
views
QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
cdf affy cdf affy
13.6 years ago Harry Mangalam ▴ 70
0
votes
10
replies
2.7k
views
RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
Microarray Normalization cdf oligo DTA Microarray Normalization cdf oligo DTA
updated 14.2 years ago by ★ 4.3k • written 14.2 years ago by ▴ 110
0
votes
10
replies
1.9k
views
package pair "hugene10stv1cdf"/"hugene10stprobeset.db"
Annotation cdf Annotation cdf
updated 14.0 years ago by 65k • written 14.0 years ago by ★ 2.3k
0
votes
10
replies
1.9k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 17.4 years ago by ▴ 460 • written 17.4 years ago by ▴ 70
0
votes
9
replies
1.8k
views
problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 80
0
votes
9
replies
1.5k
views
Appropriate Probe annotation for HT-HGU133A chips
hgu133a hgu133plus2 cdf probe hgu133a hgu133plus2 cdf probe
updated 15.0 years ago by 65k • written 15.0 years ago by ▴ 30
0
votes
9
replies
2.6k
views
frma and alternative CDFs
GO cdf frma BRAIN GO cdf frma BRAIN
updated 9.7 years ago by ▴ 830 • written 9.7 years ago by ★ 13k
0
votes
9
replies
1.9k
views
combineAffyBatch problem
cdf cdf
15.4 years ago Rifat A Hamoudi ▴ 50
0
votes
9
replies
1.6k
views
MGU74A and MGU74Av2
mgu74a mgu74av2 cdf affy mgu74a mgu74av2 cdf affy
updated 20.9 years ago by ▴ 10 • written 20.9 years ago by ▴ 80
0
votes
9
replies
1.8k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ★ 2.2k
0
votes
9
replies
2.4k
views
using frma and brainarray cdf on exon arrays
cdf affy PROcess oligo xps frma cdf affy PROcess oligo xps frma
updated 10.3 years ago by ▴ 590 • written 10.3 years ago by ▴ 100
0
votes
9
replies
1.5k
views
analyze HuEx array using HuGene .cdf file
cdf cdf
updated 15.4 years ago by ★ 2.4k • written 15.4 years ago by ★ 1.0k
0
votes
9
replies
1.7k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 16.8 years ago by 65k • written 16.8 years ago by ▴ 90
0
votes
8
replies
1.3k
views
How to generate an annotation library without CDF file?
Annotation cdf Annotation cdf
updated 12.0 years ago by ★ 4.3k • written 12.0 years ago by ▴ 40
0
votes
8
replies
1.5k
views
affylmGUI segfault on "pd.ragene.1.0.st.v1"
Normalization GO cdf affy affylmGUI Normalization GO cdf affy affylmGUI
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 70
0
votes
8
replies
1.6k
views
questions about altcdfenv
GO yeast2 cdf probe GO yeast2 cdf probe
updated 15.6 years ago by ★ 2.0k • written 15.6 years ago by ▴ 160
0
votes
8
replies
2.7k
views
Error in setQCEnvironment(cdfn)
cdf cdf
updated 11.6 years ago by 65k • written 11.6 years ago by ▴ 290
0
votes
8
replies
1.3k
views
Affymetrix HG U295 support in BioC?
cdf affy xps cdf affy xps
13.8 years ago Sole Acha, Xavi ▴ 110
0
votes
8
replies
1.6k
views
MOE430 A and B
moe430a moe430b cdf affy moe430a moe430b cdf affy
updated 20.1 years ago by ▴ 310 • written 20.1 years ago by ▴ 300
0
votes
8
replies
4.0k
views
error ReadAffy
Arabidopsis thaliana cdf affy gcrma PROcess oligo xps Arabidopsis thaliana cdf affy xps
updated 6.1 years ago by • 0 • written 10.2 years ago by ▴ 300
0
votes
8
replies
1.3k
views
affy: expresso in separated steps
Normalization cdf affy Normalization cdf affy
updated 14.5 years ago by 65k • written 14.5 years ago by ▴ 90
0
votes
8
replies
1.8k
views
error message in gcrma
cdf affy gcrma matchprobes plier cdf affy gcrma matchprobes plier
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 520
0
votes
8
replies
2.4k
views
CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 11.5 years ago by 65k • written 11.5 years ago by ▴ 290
0
votes
7
replies
1.9k
views
ragene10st
Annotation GO Rattus norvegicus ChipName cdf probe affy AnnotationDbi AffyCompatible GO
updated 15.1 years ago by ▴ 630 • written 15.2 years ago by ▴ 370
0
votes
7
replies
1.6k
views
converting Affy indices to x,y coordinates
cdf probe convert cdf probe convert
updated 13.2 years ago by ▴ 30 • written 13.2 years ago by ▴ 20
0
votes
7
replies
1.5k
views
Using ReadAffy with custom CDFs on tiling array data
cdf probe affy cdf probe affy
updated 15.7 years ago by ▴ 140 • written 15.8 years ago by ▴ 60
0
votes
7
replies
1.7k
views
A question
cdf tkWidgets cdf tkWidgets
updated 22.0 years ago by ▴ 150 • written 22.0 years ago by ▴ 20
0
votes
7
replies
1.5k
views
Assistance: mouse4302cdf installation
cdf affy cdf affy
updated 17.5 years ago by ▴ 10 • written 17.5 years ago by ▴ 20
0
votes
7
replies
977
views
question regarding MAS5 normalization with reduced probes
cdf cdf
updated 13.7 years ago by 65k • written 13.7 years ago by ▴ 820
0
votes
7
replies
1.5k
views
Problems with affycomp - quantile.default
cdf affy affycomp affyio cdf affy affycomp affyio
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 380
0
votes
7
replies
1.0k
views
making a cdf package for a custom affymetrix array
cdf cdf
updated 11.5 years ago by 65k • written 11.5 years ago by ▴ 50
3
votes
7
replies
4.2k
views
miRNA microarray analysis
microarray cdf
updated 9.0 years ago by 50k • written 9.0 years ago by ▴ 10
0
votes
6
replies
1.4k
views
mas5 update.default problem
hgu95av2 cdf affy affyio hgu95av2 cdf affy affyio
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 190
0
votes
6
replies
1.1k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 16.9 years ago by 65k • written 16.9 years ago by ★ 1.3k
0
votes
6
replies
701
views
[somehow-OT] Storing/quickly accessing "genome length" data.
GO Cancer cdf GO Cancer cdf
updated 13.2 years ago by ★ 11k • written 13.2 years ago by ★ 13k
0
votes
6
replies
2.4k
views
Library installation: odd error
cdf probe cdf probe
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ▴ 50
0
votes
6
replies
1.3k
views
xps - creating ROOT scheme fi les
Annotation cdf xps Annotation cdf xps
updated 13.9 years ago by ★ 3.9k • written 13.9 years ago by ▴ 170
0
votes
6
replies
1.4k
views
question regarding removing probes/probe sets before normalization
cdf probe cdf probe
13.7 years ago • updated 13.6 years ago Jenny Drnevich ★ 2.0k
0
votes
6
replies
3.3k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 16.7 years ago by ▴ 220 • written 16.7 years ago by ★ 2.2k
0
votes
6
replies
1.6k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
cdf exonmap xps cdf exonmap xps
updated 15.8 years ago by ★ 3.9k • written 15.8 years ago by ▴ 190
0
votes
6
replies
964
views
CDF for Cytogenetics_Array
cdf affy cdf affy
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ▴ 40
0
votes
6
replies
1.7k
views
Puma question
cdf GEOquery puma cdf GEOquery puma
13.5 years ago Manca Marco PATH ▴ 340
0
votes
6
replies
1.4k
views
Problem with MAS5 calls on MoEx array
cdf affy cdf affy
updated 14.2 years ago by ★ 3.9k • written 14.2 years ago by ▴ 70
0
votes
6
replies
1.4k
views
Binary CDF file
cdf cdf
updated 19.1 years ago by 65k • written 19.1 years ago by ▴ 50
50 results • Page 1 of 1
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Comment: minfi::read.metharray.exp by clacarion • 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp by clacarion • 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19 by shepherl 3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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