Showing : cdf • reset
6
votes
2
replies
2.3k
views
Should I skip the eBayes step when using Limma for Affymetrix miRNA v1 chip?
miRNA cdf probe limma miRNA cdf probe limma
updated 11.3 years ago by 53k • written 11.4 years ago by ★ 13k
3
votes
7
replies
5.3k
views
miRNA microarray analysis
microarray cdf
updated 10.8 years ago by 53k • written 10.8 years ago by ▴ 10
2
votes
3
replies
2.4k
views
i need AGI code as my probset
affy cdf probe
10.2 years ago • updated 10.0 years ago Angel ▴ 40
2
votes
4
replies
3.3k
views
makePdInfoPackage for Primeview arrays
BiocViews Annotation Cancer Organism cdf probe affy biocViews BiocViews BiocViews Cancer
updated 12.6 years ago by ★ 3.9k • written 12.6 years ago by ▴ 140
2
votes
5
replies
1.7k
views
Error in get(cdfname, object 'mm430mmentrezgcdf' not found
affy cdf rma
updated 7.2 years ago by ★ 4.1k • written 7.2 years ago by • 0
2
votes
2
replies
3.4k
views
Issue with 'Could not obtain CDF environment' after attempting to extract information out of an AffyBatch object
Affy cdf .cel
updated 7.8 years ago by 68k • written 7.8 years ago by • 0
2
votes
2
replies
1.8k
views
problem with custom cdf
microarray affy hgu133plus2 annotation cdf
updated 11.1 years ago by 68k • written 11.1 years ago by • 0
1
vote
3
replies
3.7k
views
How to analyse clariom d human files
limma pdinfobuilder affy cdf
8.9 years ago yusuf.khan ▴ 10
1
vote
4
replies
3.6k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 12.0 years ago by 68k • written 12.0 years ago by ★ 13k
1
vote
1
reply
2.2k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 80
1
vote
4
replies
5.8k
views
Affymetrix Human Gene 1.0 ST Array
Infrastructure cdf probe affy Infrastructure cdf probe affy
17.7 years ago Hans-Ulrich Klein ▴ 330
1
vote
1
reply
1.4k
views
altcdfenvs get wrapCdfEnvAffy error
software error microarray cdf
updated 10.5 years ago by 68k • written 10.5 years ago by ▴ 930
1
vote
0
replies
1.0k
views
Binary CEL and CDF files
cdf affy cdf affy
21.7 years ago PARK,CHRISTOPHER CHANGSUN ▴ 50
1
vote
0
replies
1.2k
views
RmiR, request for new package
miRNA Annotation GO cdf probe PROcess Category miRNA Annotation GO cdf probe PROcess
16.9 years ago Nishant Gopalakrishnan ▴ 340
1
vote
5
replies
2.8k
views
CDf files in R
affy CDF
updated 6.2 years ago by 68k • written 6.2 years ago by • 0
0
votes
0
replies
813
views
promotor tilingArray
cdf probe cdf probe
19.5 years ago Ron Ophir ▴ 270
0
votes
0
replies
1.4k
views
Error with CDF environment when using combineAffyBatch of pac kage matchprobes - mas5
Normalization cdf affy matchprobes Normalization cdf affy matchprobes
19.9 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
0
votes
0
replies
1.1k
views
alt cdf env probe index config problem
GO cdf probe affy GO cdf probe affy
21.1 years ago Rhonda DeCook ▴ 90
0
votes
0
replies
1.1k
views
PLIER affinities redux
ath1121501 cdf probe Biobase affy plier ath1121501 cdf probe Biobase affy plier
20.3 years ago Matthew Hannah ▴ 940
0
votes
2
replies
1.6k
views
Matchprobe package
cdf probe gcrma cdf probe gcrma
updated 20.4 years ago by ▴ 120 • written 20.4 years ago by ★ 13k
0
votes
1
reply
2.1k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 21.3 years ago by ★ 5.5k • written 21.3 years ago by ▴ 100
0
votes
0
replies
1.6k
views
Release of Bioconductor 1.3
Microarray Annotation Normalization GO Classification Regression Cancer hgu95a cdf probe
22.3 years ago A.J. Rossini ▴ 810
0
votes
0
replies
1.1k
views
QC report
cdf affy affyQCReport cdf affy affyQCReport
17.5 years ago Yisong Zhen ▴ 10
0
votes
8
replies
2.3k
views
questions about altcdfenv
GO yeast2 cdf probe GO yeast2 cdf probe
updated 17.3 years ago by ★ 2.0k • written 17.3 years ago by ▴ 160
0
votes
1
reply
1.8k
views
SimpeAffy: how to get/generate qcdef file?
cdf probe affy simpleaffy cdf probe affy simpleaffy
updated 17.0 years ago by ▴ 30 • written 17.0 years ago by ▴ 170
0
votes
2
replies
1.7k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 16.9 years ago by ★ 1.2k • written 16.9 years ago by ▴ 20
0
votes
0
replies
1.5k
views
Bioconductor
cdf affy affyPara cdf affy affyPara
15.3 years ago Valerie Obenchain ★ 6.8k
0
votes
1
reply
2.1k
views
Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy GSEABase hu6800 cdf multtest
updated 15.2 years ago by 25k • written 15.2 years ago by ▴ 20
0
votes
2
replies
2.1k
views
FW: PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 15.1 years ago by ▴ 120 • written 15.1 years ago by ▴ 10
0
votes
0
replies
1.8k
views
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
15.1 years ago Roman ▴ 20
0
votes
0
replies
970
views
Pd info package affy 10K array
Microarray Annotation Network Cancer cdf probe affy Microarray Annotation Network Cancer
17.6 years ago Henrik Bengtsson ★ 2.4k
0
votes
1
reply
1.0k
views
problems with pdInfoBuilder
cdf pdInfoBuilder cdf pdInfoBuilder
updated 17.9 years ago by 68k • written 17.9 years ago by ▴ 10
0
votes
0
replies
1.0k
views
Réf. : Re: Missing probesets ~ commentary from the cheap seats ...
cdf probe cdf probe
20.7 years ago Malick.PAYE@eu.biomerieux.com ▴ 110
0
votes
0
replies
1.0k
views
How to remove some probes from one probeset in the begining?
cdf probe cdf probe
17.9 years ago pkuonline ▴ 30
0
votes
0
replies
2.2k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
18.4 years ago Min Wook Kim ▴ 20
0
votes
3
replies
1.7k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 20.7 years ago by 68k • written 20.7 years ago by ▴ 40
0
votes
3
replies
1.6k
views
INstalling devel version
Microarray Pharmacogenomics Annotation GO Cancer cdf probe affy makecdfenv limma annaffy
21.5 years ago Mayte Suarez-Farinas ▴ 300
0
votes
8
replies
3.1k
views
CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 13.2 years ago by 68k • written 13.2 years ago by ▴ 290
0
votes
1
reply
1.5k
views
Error: cannot allocate vector of size 618.0 Mb
Annotation cdf Annotation cdf
updated 13.2 years ago by ▴ 580 • written 13.2 years ago by ▴ 20
0
votes
3
replies
2.0k
views
GWATools use in creating ncdf files
SNP cdf GWASTools SNP cdf GWASTools
updated 12.7 years ago by ▴ 60 • written 12.7 years ago by ▴ 890
0
votes
5
replies
2.4k
views
GWATools use in creating ncdf files
SNP Annotation cdf GWASTools SNP Annotation cdf GWASTools
updated 12.6 years ago by ▴ 60 • written 12.6 years ago by ▴ 890
0
votes
2
replies
1.4k
views
Rat St gene array 2.0
Cancer cdf Cancer cdf
updated 12.6 years ago by ▴ 10 • written 12.6 years ago by ▴ 170
0
votes
5
replies
2.3k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
12.5 years ago Alan Smith ▴ 150
0
votes
9
replies
3.7k
views
frma and alternative CDFs
GO cdf frma BRAIN GO cdf frma BRAIN
updated 11.5 years ago by ▴ 830 • written 11.5 years ago by ★ 13k
0
votes
5
replies
2.6k
views
Using custom CDF with 'make.cdf.env'
miRNA cdf probe miRNA cdf probe
updated 11.4 years ago by ▴ 130 • written 11.4 years ago by ★ 13k
0
votes
0
replies
1.7k
views
Bioconductor 1.8 for R 2.3.0 is released!
BiocViews aCGH SNP Microarray Annotation GO Clustering Cancer Yeast cdf probe RMAGEML
19.8 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.3k
views
Affymetrix exon arrays?
Normalization Cancer Breast cdf affy PROcess Normalization Cancer Breast cdf affy
updated 19.3 years ago by ▴ 20 • written 19.3 years ago by ▴ 310
0
votes
1
reply
959
views
Affy Human Gene ST1.0 cdf?
cdf cdf
updated 18.1 years ago by 68k • written 18.1 years ago by ▴ 320
0
votes
2
replies
1.4k
views
Affy and Custom CDF files
cdf probe cdf probe
updated 22.9 years ago by ★ 2.3k • written 22.9 years ago by ▴ 70
0
votes
2
replies
1.5k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 14.0 years ago by 68k • written 14.0 years ago by ▴ 630
927 results • Page 1 of 19
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Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help by Jeremy • 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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