Showing : cdf • reset
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1.3k
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Bioconductor1.6(Rgraphviz etc.) install problem with redhat 9.0
cdf cdf
updated 20.3 years ago by ★ 5.5k • written 20.3 years ago by ▴ 10
0
votes
2
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1.5k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 20.3 years ago by ▴ 780 • written 20.3 years ago by ★ 1.4k
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1
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1.5k
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zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 20.3 years ago by ★ 1.4k • written 20.3 years ago by ★ 1.1k
0
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1
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770
views
Mapping50K cdf environment
cdf cdf
updated 20.3 years ago by 68k • written 20.3 years ago by ▴ 30
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1
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1.4k
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
updated 20.3 years ago by ★ 1.4k • written 20.3 years ago by ★ 1.1k
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1.0k
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
20.3 years ago Dick Beyer ★ 1.4k
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1
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1.2k
views
making a cdf environment
cdf affy PROcess cdf affy PROcess
updated 20.3 years ago by 68k • written 20.3 years ago by ▴ 10
0
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0
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831
views
simpleaffy qc probes ratio
cdf graph simpleaffy cdf graph simpleaffy
20.4 years ago Paul.Delmar@serono.com ▴ 10
0
votes
1
reply
920
views
justMAS reliability
hgu133a cdf hgu133a cdf
updated 20.4 years ago by ★ 1.1k • written 20.4 years ago by ▴ 30
0
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1
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1.4k
views
justMAS and mas5
hgu133a cdf simpleaffy hgu133a cdf simpleaffy
updated 20.4 years ago by ★ 1.1k • written 20.4 years ago by ▴ 30
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1
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1.3k
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simpleAffy, custom chip error
Microarray Cancer cdf probe Biobase affy gcrma matchprobes simpleaffy Microarray Cancer
updated 20.4 years ago by ★ 1.1k • written 20.4 years ago by ▴ 10
0
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2
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957
views
GO from hu35ksuba
hu35ksuba cdf hu35ksuba cdf
updated 20.4 years ago by 68k • written 20.4 years ago by ★ 1.8k
0
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1
reply
1.3k
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 20.4 years ago by 68k • written 20.4 years ago by ▴ 80
0
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0
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619
views
MGUAv1 CEL files and MGUAv2 CDF File
Microarray cdf Microarray cdf
20.4 years ago Ryosuke Kadoi ▴ 10
0
votes
0
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880
views
Negative Values (?!) loaded by affy package from CEL file of MOE430A
moe430a cdf moe430a cdf
20.4 years ago lgautier@altern.org ▴ 950
0
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4
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1.4k
views
Affymetrix SDK Bioconductor package?
cdf cdf
updated 20.4 years ago by ★ 7.4k • written 20.4 years ago by ▴ 630
0
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2
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986
views
Install all CDF, Probes, Annotation metaData in One-Shot or Update them, How?
cdf cdf
updated 20.4 years ago by 68k • written 20.4 years ago by ★ 1.1k
0
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0
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902
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Problem with cdf file
cdf cdf
20.4 years ago Malick.PAYE@eu.biomerieux.com ▴ 110
0
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0
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980
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Réf. : Re: Missing probesets ~ commentary from the cheap seats ...
cdf probe cdf probe
20.4 years ago Malick.PAYE@eu.biomerieux.com ▴ 110
0
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1
reply
1.3k
views
annotation problem with hgu133plus2
Annotation GO hgu133plus2 cdf annotate affy siggenes annaffy Annotation GO hgu133plus2
20.5 years ago • updated 20.4 years ago Yanqin Yang ▴ 250
0
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0
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786
views
Negative Values (?!) loaded by affy package from CEL file of MOE430A
moe430a cdf moe430a cdf
20.4 years ago Simon Lin ▴ 270
0
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0
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1.0k
views
annotation problem with hgu133plus2
GO cdf annotate reposTools affy siggenes annaffy GO cdf annotate reposTools affy
20.5 years ago Seth Falcon ★ 7.4k
0
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0
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778
views
Affy normalized data using cdf env and rma
cdf cdf
20.5 years ago Junshi Yazaki ▴ 40
0
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0
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834
views
Affymetrix SDK Bioconductor package?
cdf cdf
20.5 years ago James Bullard ▴ 70
0
votes
0
replies
668
views
Re: Working flow_own CEL file reading problem
cdf affy cdf affy
20.5 years ago Seth Falcon ★ 7.4k
0
votes
3
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1.7k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 40
0
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0
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1.1k
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
cdf probe makecdfenv cdf probe makecdfenv
20.5 years ago Seth Falcon ★ 7.4k
0
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0
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1.1k
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
Microarray Cancer cdf probe makecdfenv Microarray Cancer cdf probe makecdfenv
20.5 years ago James W. MacDonald 68k
0
votes
0
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847
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
cdf probe cdf probe
20.5 years ago Junshi Yazaki ▴ 40
0
votes
1
reply
736
views
makeProbePackage problem
cdf probe affy cdf probe affy
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 30
0
votes
3
replies
960
views
make own CDF package probelm, error "installed < 2.0.0"
cdf probe cdf probe
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 30
0
votes
2
replies
1.3k
views
moe430v2 annotation package?
Annotation GO mouse4302 cdf probe Annotation GO mouse4302 cdf probe
updated 20.5 years ago by ★ 2.9k • written 20.5 years ago by ▴ 30
0
votes
3
replies
1.2k
views
GO with mu11ksuba(b)
GO hgu95av2 mu11ksuba cdf GO hgu95av2 mu11ksuba cdf
updated 20.5 years ago by ★ 7.4k • written 20.5 years ago by ▴ 300
0
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1
reply
1.3k
views
custom affy chip, mm values with NA (affy, makecdfenv)
cdf affy cdf affy
20.5 years ago James Bullard ▴ 70
0
votes
1
reply
731
views
CDF package for wheat Affymetrix chip
cdf cdf
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 10
0
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2
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1.3k
views
Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 20.5 years ago by ★ 5.5k • written 20.5 years ago by ▴ 110
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0
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1.2k
views
xy2i in SNps...
cdf cdf
20.5 years ago Mayte Suarez-Farinas ▴ 300
0
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2
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1.1k
views
ReadAffy for moe430acdf
cdf reposTools affy cdf reposTools affy
updated 20.5 years ago by ★ 7.4k • written 20.5 years ago by ▴ 160
0
votes
1
reply
705
views
CDF file for Rhodobacter
cdf affy cdf affy
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 10
0
votes
1
reply
1.0k
views
qc.affy problem
cdf cdf
updated 20.5 years ago by ★ 1.1k • written 20.5 years ago by ▴ 40
0
votes
0
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960
views
remove probes - example script
cdf probe gcrma cdf probe gcrma
20.5 years ago Ariel Chernomoretz ▴ 380
0
votes
0
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1.2k
views
remove probes - code
cdf probe affy gcrma affyPLM cdf probe affy gcrma affyPLM
20.5 years ago Ariel Chernomoretz ▴ 380
0
votes
0
replies
772
views
remove probes - GCRMA 1.1.3 weird behavior
cdf probe gcrma cdf probe gcrma
20.5 years ago Ariel Chernomoretz ▴ 380
0
votes
1
reply
938
views
help on cdf file
cdf probe cdf probe
updated 20.6 years ago by ★ 1.1k • written 20.6 years ago by ▴ 890
0
votes
4
replies
1.5k
views
Quantile normalization without using affyBatch
Normalization cdf gcrma Normalization cdf gcrma
updated 20.6 years ago by ▴ 60 • written 20.6 years ago by ▴ 60
0
votes
1
reply
1.3k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 20.6 years ago by 68k • written 20.6 years ago by ▴ 10
0
votes
2
replies
1.2k
views
makecdfenv error
cdf makecdfenv cdf makecdfenv
updated 20.6 years ago by 68k • written 20.6 years ago by ▴ 10
0
votes
2
replies
1.0k
views
drosophila2 source question
drosophila2 cdf drosophila2 cdf
20.6 years ago Cyrus Harmon ▴ 140
0
votes
0
replies
747
views
Re: justGCRMA and binary .CDF file
Microarray Cancer cdf probe affy matchprobes Microarray Cancer cdf probe affy
20.6 years ago James W. MacDonald 68k
0
votes
0
replies
865
views
justGCRMA and binary .CDF file
cdf probe matchprobes cdf probe matchprobes
20.6 years ago andrew.w.wooster@gsk.com ▴ 50
927 results • Page 14 of 19
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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