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cds
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0
votes
4
replies
2.0k
views
Merging each element of a list of Genomic range
txdb
granges
cds
orf
R
updated 6.5 years ago by
James W. MacDonald
67k • written 6.5 years ago by
q.thomas
• 0
1
vote
3
replies
1.6k
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 6.8 years ago by
rcavalca
▴ 140 • written 6.8 years ago by
xie186
• 0
2
votes
1
reply
1.8k
views
Extracting UTRs from exon and CDS data
genomeintervals
UTRs
exons
CDS
GenomicRanges
updated 7.3 years ago by
Michael Lawrence
★ 11k • written 7.3 years ago by
rubi
▴ 110
3
votes
1
reply
2.1k
views
Extracting Coordinates of startcodon from Grangeslist
biomart
bioconductor
grangeslist
cds
ribosome profiling
updated 7.5 years ago by
Hervé Pagès
16k • written 7.5 years ago by
Walter F. Baumann
▴ 10
2
votes
2
replies
2.9k
views
Get the genomic coordinates for the coding sequence (CDS) of a gene
genomicfeatures
txdb.hsapiens.ucsc.hg19.knowngene
cds
8.2 years ago
madsheilskov
▴ 10
0
votes
3
replies
2.0k
views
how to get complete cds annotation information ?
cds
9.0 years ago
KB
▴ 50
2
votes
10
replies
2.5k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 9.0 years ago by
Michael Lawrence
★ 11k • written 9.0 years ago by
madsheilskov
▴ 10
0
votes
1
reply
1.5k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 3.0 years ago by
balajee
• 0 • written 9.0 years ago by
madsheilskov
▴ 10
8 results • Page
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Replies
Comment: Differential Expression Genes as Independent Variables
by
Dario Strbenac
★ 1.5k
Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …
Comment: rrvgo::calculateSimMatrix() error
by
Phila
• 0
Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/
Comment: Merge Replicates vs Mixed Model
by
gabriel.hoffman
▴ 170
For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.
Comment: Differential Expression Genes as Independent Variables
by
Gordon Smyth
52k
Such an analysis cannot be done in limma. Sorry, I cannot tell you how to do it or even whether it is possible.
Votes
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Transcript-level differential expression using DESeq2
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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