Biostar CdsByOverlaps

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GRanges GenomicRanges GenomicFeatures cdsByOverlaps DiffBind

updated 23 months ago by James W. MacDonald 60k • written 23 months ago by vanbelj ▴ 10

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Comment: converting position from '-' strand to '+' strand by analeonpalacio ▴ 10

Hi Hervé, Thanks for the explanation. I am a bit confused about the conventions used by Ensembl. In some cases (insertions), the coordinate…

Comment: rename phenotypic variables in pData (microarray) or colData (RNA-Seq) by Basti ▴ 330

Could you share an example of your dataset( `dput(...)`) ? I tried with a random ExpressionSet and `names(p(Data(dataset))[1] <- "New_VAR"`…

Comment: rename phenotypic variables in pData (microarray) or colData (RNA-Seq) by jogugil • 0

names(pData(microarray))[1]<- "NEW_VAR" It doesn't work, it gives the following error: invalid (NULL) left side of assignment you canno…

Answer: Can't Install ensembldb and EnsDb.Hsapiens.v86 by elmfinds • 0

Thank you mbk0asis and Johannes! Installing png solved my issue. I appreciate your help!

Comment: Combine GRanges(List) to a single GRanges with unified breakpoints by Rodrigo • 0

Hi @malcolm-cook-6293 , Thanks again for the help. The code got me started albeit, I changed a bit the handling of the metadata. ``` #'…

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