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ensembl cdschrom org.Hs.eg.db AnnotationDbi SingleCellExperiment

updated 3.2 years ago by James W. MacDonald 60k • written 3.2 years ago by kushshah ▴ 10

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Comment: Error "DESeqDataSetFromMatrix" function not found by Basti ▴ 330

Do you have any error when you run `library(DESeq2)` or `BiocManager::install("DESeq2")` ?

Answer: Compare different cell lines with tissues using limma by Gordon Smyth 45k

You just need to define contrasts corresponding to the comparisons you want to make. Just define ``` design <- model.matrix(~0+cellType) c…

Comment: What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enric by Bhavana • 0

Thank you so much for your response, I will keep in mind regarding making posts about Bioconductor packages! :)

Comment: Function simplify fails when argument ont is set to "ALL" in enrichGO function i by pengmin.wang.1 • 0

sorry, I post my question here, maybe not related to the topic. Now I'm doing enrichment using clusterprofiler and WebGestalR. Here, x <- u…

Answer: Can´t install GenomicRanges and rtracklayer by James W. MacDonald 60k

You can't just call `BiocManager::install()` and expect it to know what you want to install! You need to specify the packages you want as a…

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